Analysis of interatomic Contacts of Structural Units in PDB entry:
4BPS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BPS entry

There is 1 chain in PDB entry 4BPS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 14ALA 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 4BPS. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
67 71Right-handed 310
Helix 2
2
A
111 130Right-handed alpha
Helix 3
3
A
153 170Right-handed alpha
Helix 4
4
A
172 176Right-handed 310
Helix 5
5
A
211 215Right-handed 310
Helix 6
6
A
216 220Right-handed 310
Helix 7
7
A
258 275Right-handed alpha
Helix 8
8
A
275 282Right-handed alpha
Helix 9
9
A
289 293Right-handed 310
Helix 10
10
A
302 304Right-handed 310
Helix 11
11
A
305 315Right-handed alpha
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There are 4 sheets in PDB entry 4BPS. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
21 25first strand
Strand 2
A
72 77anti-parallel
Strand 3
A
38 44anti-parallel
Strand 4
A
57 62parallel
Strand 5
A
52 54anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
83 87first strand
Strand 2
A
90 94anti-parallel
Strand 3
A
98 105anti-parallel
Strand 4
A
189 196anti-parallel
Strand 5
A
133 142anti-parallel
Strand 6
A
178 184parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
201 204first strand
Strand 2
A
229 232anti-parallel
Strand 3
A
239 246anti-parallel
Strand 4
A
337 343anti-parallel
Strand 5
A
294 300anti-parallel
Strand 6
A
323 327parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
248 249first strand
Strand 2
A
252 253anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il