Analysis of interatomic Contacts of Structural Units in PDB entry:
4BPT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BPT entry

There are 4 chains in PDB entry 4BPT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 8ASP 259
B
 VAL 8ASP 259
C
 TRP 28ASP 259
D
 TYR 20ASP 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 4BPT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 39Right-handed alpha
Helix 2
2
A
44 54Right-handed alpha
Helix 3
3
A
63 76Right-handed alpha
Helix 4
4
A
87 97Right-handed alpha
Helix 5
5
A
108 112Right-handed 310
Helix 6
6
A
119 125Right-handed alpha
Helix 7
7
A
127 132Right-handed 310
Helix 8
8
A
133 147Right-handed alpha
Helix 9
9
A
151 153Right-handed 310
Helix 10
10
A
154 164Right-handed alpha
Helix 11
11
A
181 186Right-handed alpha
Helix 12
12
A
187 197Right-handed alpha
Helix 13
13
A
206 213Right-handed alpha
Helix 14
14
A
229 238Right-handed alpha
Helix 15
15
A
244 249Right-handed alpha
Helix 16
16
B
22 39Right-handed alpha
Helix 17
17
B
44 54Right-handed alpha
Helix 18
18
B
63 76Right-handed alpha
Helix 19
19
B
87 97Right-handed alpha
Helix 20
20
B
108 112Right-handed 310
Helix 21
21
B
119 125Right-handed alpha
Helix 22
22
B
127 132Right-handed 310
Helix 23
23
B
133 147Right-handed alpha
Helix 24
24
B
151 153Right-handed 310
Helix 25
25
B
154 165Right-handed alpha
Helix 26
26
B
181 186Right-handed alpha
Helix 27
27
B
187 197Right-handed alpha
Helix 28
28
B
206 213Right-handed alpha
Helix 29
29
B
229 238Right-handed alpha
Helix 30
30
B
240 249Right-handed alpha
Helix 31
31
C
28 39Right-handed alpha
Helix 32
32
C
44 54Right-handed alpha
Helix 33
33
C
63 76Right-handed alpha
Helix 34
34
C
87 97Right-handed alpha
Helix 35
35
C
119 125Right-handed alpha
Helix 36
36
C
127 132Right-handed 310
Helix 37
37
C
133 147Right-handed alpha
Helix 38
38
C
151 153Right-handed 310
Helix 39
39
C
154 164Right-handed alpha
Helix 40
40
C
181 186Right-handed alpha
Helix 41
41
C
187 194Right-handed alpha
Helix 42
42
C
206 213Right-handed alpha
Helix 43
43
C
229 238Right-handed alpha
Helix 44
44
C
241 249Right-handed alpha
Helix 45
45
D
23 39Right-handed alpha
Helix 46
46
D
44 54Right-handed alpha
Helix 47
47
D
63 76Right-handed alpha
Helix 48
48
D
87 97Right-handed alpha
Helix 49
49
D
108 112Right-handed 310
Helix 50
50
D
119 125Right-handed alpha
Helix 51
51
D
127 132Right-handed 310
Helix 52
52
D
133 147Right-handed alpha
Helix 53
53
D
151 153Right-handed 310
Helix 54
54
D
154 164Right-handed alpha
Helix 55
55
D
181 186Right-handed alpha
Helix 56
56
D
187 194Right-handed alpha
Helix 57
57
D
206 213Right-handed alpha
Helix 58
58
D
229 236Right-handed alpha
Helix 59
59
D
244 249Right-handed alpha
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There are 8 sheets in PDB entry 4BPT. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 82first strand
Strand 2
A
99 103parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 179first strand
Strand 2
A
170 173anti-parallel
Strand 3
A
223 227parallel
Strand 4
A
201 204parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 82first strand
Strand 2
B
99 103parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 179first strand
Strand 2
B
170 173anti-parallel
Strand 3
B
223 227parallel
Strand 4
B
201 204parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 82first strand
Strand 2
C
99 103parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
176 179first strand
Strand 2
C
170 173anti-parallel
Strand 3
C
223 227parallel
Strand 4
C
201 204parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
78 82first strand
Strand 2
D
99 103parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
176 179first strand
Strand 2
D
170 173anti-parallel
Strand 3
D
223 227parallel
Strand 4
D
201 204parallel
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