Analysis of interatomic Contacts of Structural Units in PDB entry:
4BPV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4BPV entry

There are 6 chains in PDB entry 4BPV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 122	ILE 340
B	THR 122	ILE 340
C	THR 122	ILE 340
D	THR 122	ILE 340
E	THR 122	ILE 340
K	ASP 243	TYR 334

There are 46 helices in PDB entry 4BPV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	130	133	Right-handed 310
Helix 2	2	A	146	165	Right-handed alpha
Helix 3	3	A	171	179	Right-handed alpha
Helix 4	4	A	187	189	Right-handed 310
Helix 5	5	A	193	205	Right-handed alpha
Helix 6	6	A	225	227	Right-handed 310
Helix 7	7	A	243	254	Right-handed alpha
Helix 8	8	A	265	270	Right-handed alpha
Helix 9	9	A	327	331	Right-handed 310
Helix 10	10	B	130	133	Right-handed 310
Helix 11	11	B	146	165	Right-handed alpha
Helix 12	12	B	171	179	Right-handed alpha
Helix 13	13	B	187	191	Right-handed 310
Helix 14	14	B	193	205	Right-handed alpha
Helix 15	15	B	225	227	Right-handed 310
Helix 16	16	B	243	254	Right-handed alpha
Helix 17	17	B	265	271	Right-handed alpha
Helix 18	18	B	327	331	Right-handed 310
Helix 19	19	C	146	165	Right-handed alpha
Helix 20	20	C	171	179	Right-handed alpha
Helix 21	21	C	187	191	Right-handed 310
Helix 22	22	C	193	205	Right-handed alpha
Helix 23	23	C	225	227	Right-handed 310
Helix 24	24	C	243	254	Right-handed alpha
Helix 25	25	C	265	271	Right-handed alpha
Helix 26	26	C	327	331	Right-handed 310
Helix 27	27	D	146	165	Right-handed alpha
Helix 28	28	D	171	179	Right-handed alpha
Helix 29	29	D	187	189	Right-handed 310
Helix 30	30	D	193	205	Right-handed alpha
Helix 31	31	D	225	227	Right-handed 310
Helix 32	32	D	243	254	Right-handed alpha
Helix 33	33	D	265	270	Right-handed alpha
Helix 34	34	D	327	331	Right-handed 310
Helix 35	35	E	130	133	Right-handed 310
Helix 36	36	E	146	165	Right-handed alpha
Helix 37	37	E	171	179	Right-handed alpha
Helix 38	38	E	187	191	Right-handed 310
Helix 39	39	E	193	205	Right-handed alpha
Helix 40	40	E	225	227	Right-handed 310
Helix 41	41	E	243	254	Right-handed alpha
Helix 42	42	E	265	270	Right-handed alpha
Helix 43	43	E	327	331	Right-handed 310
Helix 44	44	K	243	252	Right-handed alpha
Helix 45	45	K	265	270	Right-handed alpha
Helix 46	46	K	327	331	Right-handed 310

There are 29 sheets in PDB entry 4BPV. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF, CA, CB, CC, CD, CE, CF, A, DB, C, DD, DE, DF, EA, EB, EC, ED, KA,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	128	first strand
Strand 2	A	287	297	parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	261	first strand
Strand 2	A	287	297	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	322	first strand
Strand 2	A	300	306	anti-parallel
Strand 3	A	287	297	anti-parallel
Strand 4	A	257	261	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	322	first strand
Strand 2	A	300	306	anti-parallel
Strand 3	A	287	297	anti-parallel
Strand 4	A	127	128	parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	229	231	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	238	first strand
Strand 2	A	336	339	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	128	first strand
Strand 2	B	287	297	parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	261	first strand
Strand 2	B	287	297	anti-parallel

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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	276	first strand
Strand 2	B	318	322	parallel
Strand 3	B	300	306	anti-parallel
Strand 4	B	287	297	anti-parallel
Strand 5	B	257	261	anti-parallel

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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	276	first strand
Strand 2	B	318	322	parallel
Strand 3	B	300	306	anti-parallel
Strand 4	B	287	297	anti-parallel
Strand 5	B	127	128	parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	208	first strand
Strand 2	B	229	231	anti-parallel

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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	238	first strand
Strand 2	B	336	339	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	128	first strand
Strand 2	C	287	297	parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	261	first strand
Strand 2	C	287	297	anti-parallel

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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	322	first strand
Strand 2	C	300	306	anti-parallel
Strand 3	C	287	297	anti-parallel
Strand 4	C	257	261	anti-parallel

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There are 4 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	322	first strand
Strand 2	C	300	306	anti-parallel
Strand 3	C	287	297	anti-parallel
Strand 4	C	127	128	parallel

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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	208	first strand
Strand 2	C	229	231	anti-parallel

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There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	238	first strand
Strand 2	C	336	339	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	128	first strand
Strand 2	D	287	297	parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	261	first strand
Strand 2	D	287	297	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	322	first strand
Strand 2	D	300	306	anti-parallel
Strand 3	D	287	297	anti-parallel
Strand 4	D	257	261	anti-parallel

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There are 4 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	322	first strand
Strand 2	D	300	306	anti-parallel
Strand 3	D	287	297	anti-parallel
Strand 4	D	127	128	parallel

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There are 2 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	208	first strand
Strand 2	D	229	231	anti-parallel

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There are 2 strands in DF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	238	first strand
Strand 2	D	336	339	anti-parallel

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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	128	first strand
Strand 2	E	287	297	parallel

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There are 6 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	235	238	first strand
Strand 2	E	335	339	anti-parallel
Strand 3	E	257	261	anti-parallel
Strand 4	E	287	297	anti-parallel
Strand 5	E	300	306	anti-parallel
Strand 6	E	318	322	anti-parallel

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There are 5 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	235	238	first strand
Strand 2	E	335	339	anti-parallel
Strand 3	E	257	261	anti-parallel
Strand 4	E	287	297	anti-parallel
Strand 5	E	127	128	parallel

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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	207	208	first strand
Strand 2	E	229	231	anti-parallel

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There are 5 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	259	260	first strand
Strand 2	K	288	297	anti-parallel
Strand 3	K	300	306	anti-parallel
Strand 4	K	318	322	anti-parallel
Strand 5	K	275	276	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4BPV

Analysis of interatomic Contacts of Structural Units in PDB entry:
4BPV