Analysis of interatomic Contacts of Structural Units in PDB entry:
4BPX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BPX entry

There are 4 chains in PDB entry 4BPX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3GLY 408
B
 ILE 37LEU 253
C
 PHE 4GLY 408
D
 GLY 1445LEU 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 4BPX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 20Right-handed alpha
Helix 2
2
A
22 32Right-handed alpha
Helix 3
3
A
33 35Right-handed 310
Helix 4
4
A
50 52Right-handed 310
Helix 5
5
A
62 74Right-handed alpha
Helix 6
6
A
87 91Right-handed 310
Helix 7
7
A
113 116Right-handed 310
Helix 8
8
A
128 149Right-handed alpha
Helix 9
9
A
173 177Right-handed 310
Helix 10
10
A
178 190Right-handed alpha
Helix 11
11
A
209 228Right-handed alpha
Helix 12
12
A
236 245Right-handed alpha
Helix 13
13
A
248 250Right-handed 310
Helix 14
14
A
251 262Right-handed alpha
Helix 15
15
A
264 282Right-handed alpha
Helix 16
16
A
291 302Right-handed alpha
Helix 17
17
A
306 312Right-handed alpha
Helix 18
18
A
335 339Right-handed 310
Helix 19
19
A
349 358Right-handed alpha
Helix 20
20
A
382 386Right-handed 310
Helix 21
21
A
388 408Right-handed alpha
Helix 22
22
B
38 59Right-handed alpha
Helix 23
23
B
72 81Right-handed alpha
Helix 24
24
B
97 110Right-handed alpha
Helix 25
25
B
113 134Right-handed alpha
Helix 26
26
B
136 147Right-handed alpha
Helix 27
27
B
156 162Right-handed alpha
Helix 28
28
B
162 168Right-handed alpha
Helix 29
29
B
191 196Right-handed alpha
Helix 30
30
B
212 237Right-handed alpha
Helix 31
31
B
243 245Right-handed 310
Helix 32
32
B
246 253Right-handed alpha
Helix 33
33
C
8 20Right-handed alpha
Helix 34
34
C
22 32Right-handed alpha
Helix 35
35
C
33 35Right-handed 310
Helix 36
36
C
50 52Right-handed 310
Helix 37
37
C
62 74Right-handed alpha
Helix 38
38
C
87 91Right-handed 310
Helix 39
39
C
113 116Right-handed 310
Helix 40
40
C
132 149Right-handed alpha
Helix 41
41
C
171 176Right-handed alpha
Helix 42
42
C
178 190Right-handed alpha
Helix 43
43
C
209 228Right-handed alpha
Helix 44
44
C
236 245Right-handed alpha
Helix 45
45
C
248 250Right-handed 310
Helix 46
46
C
251 262Right-handed alpha
Helix 47
47
C
264 282Right-handed alpha
Helix 48
48
C
291 302Right-handed alpha
Helix 49
49
C
307 312Right-handed alpha
Helix 50
50
C
335 339Right-handed 310
Helix 51
51
C
349 358Right-handed alpha
Helix 52
52
C
388 408Right-handed alpha
Helix 53
53
D
1451 1455Right-handed alpha
Helix 54
54
D
38 63Right-handed alpha
Helix 55
55
D
67 81Right-handed alpha
Helix 56
56
D
89 91Right-handed 310
Helix 57
57
D
92 110Right-handed alpha
Helix 58
58
D
113 134Right-handed alpha
Helix 59
59
D
136 143Right-handed alpha
Helix 60
60
D
156 162Right-handed alpha
Helix 61
61
D
162 168Right-handed alpha
Helix 62
62
D
191 196Right-handed alpha
Helix 63
63
D
213 237Right-handed alpha
Helix 64
64
D
238 240Right-handed 310
Helix 65
65
D
243 245Right-handed 310
Helix 66
66
D
246 252Right-handed alpha
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There are 11 sheets in PDB entry 4BPX. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, CA, CB, CC, CD, A, DB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 58first strand
Strand 2
A
43 48anti-parallel
Strand 3
A
77 84anti-parallel
Strand 4
A
101 103anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 58first strand
Strand 2
A
43 48anti-parallel
Strand 3
A
77 84anti-parallel
Strand 4
A
317 318anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 103first strand
Strand 2
A
77 84anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 111first strand
Strand 2
A
164 169anti-parallel
Strand 3
A
155 159anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 187first strand
Strand 2
B
206 209anti-parallel
Strand 3
B
201 203anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 58first strand
Strand 2
C
43 48anti-parallel
Strand 3
C
77 84anti-parallel
Strand 4
C
101 103anti-parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 58first strand
Strand 2
C
43 48anti-parallel
Strand 3
C
77 84anti-parallel
Strand 4
C
317 318anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
101 103first strand
Strand 2
C
77 84anti-parallel
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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
106 111first strand
Strand 2
C
164 169anti-parallel
Strand 3
C
155 159anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1449 1450first strand
Strand 2
D
36 37anti-parallel
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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
183 187first strand
Strand 2
D
206 210anti-parallel
Strand 3
D
201 203anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il