Analysis of interatomic Contacts of Structural Units in PDB entry:
4BQ3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4BQ3 entry

There are 4 chains in PDB entry 4BQ3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 45	GLY 791
B	SER 45	SER 792
C	SER 45	GLY 791
D	GLY 44	SER 792

There are 92 helices in PDB entry 4BQ3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	161	165	Right-handed 310
Helix 2	2	A	264	279	Right-handed alpha
Helix 3	3	A	346	350	Right-handed 310
Helix 4	4	A	360	364	Right-handed 310
Helix 5	5	A	370	376	Right-handed alpha
Helix 6	6	A	381	386	Right-handed alpha
Helix 7	7	A	398	400	Right-handed 310
Helix 8	8	A	420	431	Right-handed alpha
Helix 9	9	A	436	453	Right-handed alpha
Helix 10	10	A	463	467	Right-handed 310
Helix 11	11	A	502	521	Right-handed alpha
Helix 12	12	A	542	547	Right-handed alpha
Helix 13	13	A	547	555	Right-handed alpha
Helix 14	14	A	561	576	Right-handed alpha
Helix 15	15	A	577	586	Right-handed alpha
Helix 16	16	A	591	596	Right-handed alpha
Helix 17	17	A	607	637	Right-handed alpha
Helix 18	18	A	653	664	Right-handed alpha
Helix 19	19	A	677	682	Right-handed alpha
Helix 20	20	A	683	688	Right-handed alpha
Helix 21	21	A	715	733	Right-handed alpha
Helix 22	22	A	771	783	Right-handed alpha
Helix 23	23	A	784	791	Right-handed alpha
Helix 24	24	B	161	165	Right-handed 310
Helix 25	25	B	264	279	Right-handed alpha
Helix 26	26	B	346	350	Right-handed 310
Helix 27	27	B	360	364	Right-handed 310
Helix 28	28	B	370	376	Right-handed alpha
Helix 29	29	B	381	387	Right-handed alpha
Helix 30	30	B	396	400	Right-handed 310
Helix 31	31	B	420	431	Right-handed alpha
Helix 32	32	B	436	454	Right-handed alpha
Helix 33	33	B	463	467	Right-handed 310
Helix 34	34	B	502	521	Right-handed alpha
Helix 35	35	B	542	547	Right-handed alpha
Helix 36	36	B	547	556	Right-handed alpha
Helix 37	37	B	561	576	Right-handed alpha
Helix 38	38	B	577	586	Right-handed alpha
Helix 39	39	B	591	596	Right-handed alpha
Helix 40	40	B	607	637	Right-handed alpha
Helix 41	41	B	648	652	Right-handed 310
Helix 42	42	B	653	664	Right-handed alpha
Helix 43	43	B	678	682	Right-handed 310
Helix 44	44	B	683	688	Right-handed alpha
Helix 45	45	B	715	733	Right-handed alpha
Helix 46	46	B	771	783	Right-handed alpha
Helix 47	47	B	784	791	Right-handed alpha
Helix 48	48	C	161	165	Right-handed 310
Helix 49	49	C	205	207	Right-handed 310
Helix 50	50	C	264	279	Right-handed alpha
Helix 51	51	C	346	350	Right-handed 310
Helix 52	52	C	360	364	Right-handed 310
Helix 53	53	C	370	376	Right-handed alpha
Helix 54	54	C	381	386	Right-handed alpha
Helix 55	55	C	398	400	Right-handed 310
Helix 56	56	C	420	431	Right-handed alpha
Helix 57	57	C	436	453	Right-handed alpha
Helix 58	58	C	463	467	Right-handed 310
Helix 59	59	C	502	521	Right-handed alpha
Helix 60	60	C	542	547	Right-handed alpha
Helix 61	61	C	547	555	Right-handed alpha
Helix 62	62	C	561	576	Right-handed alpha
Helix 63	63	C	577	586	Right-handed alpha
Helix 64	64	C	591	596	Right-handed alpha
Helix 65	65	C	607	637	Right-handed alpha
Helix 66	66	C	648	652	Right-handed 310
Helix 67	67	C	653	664	Right-handed alpha
Helix 68	68	C	678	682	Right-handed 310
Helix 69	69	C	683	688	Right-handed alpha
Helix 70	70	C	715	732	Right-handed alpha
Helix 71	71	C	771	791	Right-handed alpha
Helix 72	72	D	161	165	Right-handed 310
Helix 73	73	D	264	279	Right-handed alpha
Helix 74	74	D	346	350	Right-handed 310
Helix 75	75	D	360	364	Right-handed 310
Helix 76	76	D	370	376	Right-handed alpha
Helix 77	77	D	381	386	Right-handed alpha
Helix 78	78	D	396	400	Right-handed 310
Helix 79	79	D	420	431	Right-handed alpha
Helix 80	80	D	436	454	Right-handed alpha
Helix 81	81	D	463	467	Right-handed 310
Helix 82	82	D	502	521	Right-handed alpha
Helix 83	83	D	542	547	Right-handed alpha
Helix 84	84	D	547	555	Right-handed alpha
Helix 85	85	D	561	576	Right-handed alpha
Helix 86	86	D	577	586	Right-handed alpha
Helix 87	87	D	591	596	Right-handed alpha
Helix 88	88	D	607	637	Right-handed alpha
Helix 89	89	D	653	664	Right-handed alpha
Helix 90	90	D	683	688	Right-handed alpha
Helix 91	91	D	715	733	Right-handed alpha
Helix 92	92	D	771	791	Right-handed alpha

There are 40 sheets in PDB entry 4BQ3. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, CA, CB, CC, CD, CE, CF, CG, CH, CI, CJ, A, DB, C, DD, DE, DF, G, DH, DI, DJ,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	49	first strand
Strand 2	A	223	234	parallel

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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	73	first strand
Strand 2	A	79	87	anti-parallel
Strand 3	A	223	234	anti-parallel
Strand 4	A	113	122	anti-parallel
Strand 5	A	153	158	anti-parallel
Strand 6	A	193	194	parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	73	first strand
Strand 2	A	79	87	anti-parallel
Strand 3	A	223	234	anti-parallel
Strand 4	A	46	49	parallel

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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	63	first strand
Strand 2	A	94	99	anti-parallel
Strand 3	A	209	217	anti-parallel
Strand 4	A	127	135	anti-parallel
Strand 5	A	140	147	anti-parallel
Strand 6	A	196	200	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	310	first strand
Strand 2	A	313	317	anti-parallel
Strand 3	A	323	324	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	329	first strand
Strand 2	A	736	741	parallel
Strand 3	A	691	695	parallel
Strand 4	A	667	670	parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	416	419	anti-parallel
Strand 3	A	402	405	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	344	first strand
Strand 2	A	378	379	anti-parallel

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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	474	478	first strand
Strand 2	A	526	531	parallel
Strand 3	A	641	642	parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	487	first strand
Strand 2	A	497	498	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	49	first strand
Strand 2	B	223	234	parallel

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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	73	first strand
Strand 2	B	79	87	anti-parallel
Strand 3	B	223	234	anti-parallel
Strand 4	B	113	121	anti-parallel
Strand 5	B	153	158	anti-parallel
Strand 6	B	193	194	parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	73	first strand
Strand 2	B	79	87	anti-parallel
Strand 3	B	223	234	anti-parallel
Strand 4	B	46	49	parallel

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There are 6 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	63	first strand
Strand 2	B	94	99	anti-parallel
Strand 3	B	209	217	anti-parallel
Strand 4	B	127	135	anti-parallel
Strand 5	B	140	147	anti-parallel
Strand 6	B	196	200	anti-parallel

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There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	310	first strand
Strand 2	B	313	317	anti-parallel
Strand 3	B	323	324	anti-parallel

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There are 4 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	329	first strand
Strand 2	B	736	741	parallel
Strand 3	B	691	695	parallel
Strand 4	B	667	670	parallel

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There are 3 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	416	419	anti-parallel
Strand 3	B	402	405	anti-parallel

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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	344	first strand
Strand 2	B	378	379	anti-parallel

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There are 3 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	474	478	first strand
Strand 2	B	526	531	parallel
Strand 3	B	641	642	parallel

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There are 2 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	487	first strand
Strand 2	B	497	498	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	49	first strand
Strand 2	C	223	234	parallel

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There are 6 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	73	first strand
Strand 2	C	79	87	anti-parallel
Strand 3	C	223	234	anti-parallel
Strand 4	C	113	121	anti-parallel
Strand 5	C	153	158	anti-parallel
Strand 6	C	193	194	parallel

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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	73	first strand
Strand 2	C	79	87	anti-parallel
Strand 3	C	223	234	anti-parallel
Strand 4	C	46	49	parallel

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There are 6 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	63	first strand
Strand 2	C	94	99	anti-parallel
Strand 3	C	209	217	anti-parallel
Strand 4	C	127	135	anti-parallel
Strand 5	C	140	147	anti-parallel
Strand 6	C	196	200	anti-parallel

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There are 3 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	310	first strand
Strand 2	C	313	317	anti-parallel
Strand 3	C	323	324	anti-parallel

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There are 4 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	326	329	first strand
Strand 2	C	736	741	parallel
Strand 3	C	691	695	parallel
Strand 4	C	667	670	parallel

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There are 3 strands in CG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	340	first strand
Strand 2	C	416	419	anti-parallel
Strand 3	C	402	405	anti-parallel

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There are 2 strands in CH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	343	344	first strand
Strand 2	C	378	379	anti-parallel

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There are 3 strands in CI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	474	478	first strand
Strand 2	C	526	531	parallel
Strand 3	C	641	642	parallel

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There are 2 strands in CJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	486	487	first strand
Strand 2	C	497	498	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	49	first strand
Strand 2	D	223	234	parallel

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There are 6 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	73	first strand
Strand 2	D	79	87	anti-parallel
Strand 3	D	223	234	anti-parallel
Strand 4	D	113	122	anti-parallel
Strand 5	D	153	160	anti-parallel
Strand 6	D	193	194	parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	73	first strand
Strand 2	D	79	87	anti-parallel
Strand 3	D	223	234	anti-parallel
Strand 4	D	46	49	parallel

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There are 6 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	63	first strand
Strand 2	D	94	99	anti-parallel
Strand 3	D	209	217	anti-parallel
Strand 4	D	127	135	anti-parallel
Strand 5	D	140	147	anti-parallel
Strand 6	D	196	200	anti-parallel

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There are 3 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	306	310	first strand
Strand 2	D	313	317	anti-parallel
Strand 3	D	323	324	anti-parallel

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There are 4 strands in DF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	326	329	first strand
Strand 2	D	736	741	parallel
Strand 3	D	691	695	parallel
Strand 4	D	667	670	parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	340	first strand
Strand 2	D	416	419	anti-parallel
Strand 3	D	402	405	anti-parallel

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There are 2 strands in DH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	343	344	first strand
Strand 2	D	378	379	anti-parallel

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There are 3 strands in DI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	474	478	first strand
Strand 2	D	526	531	parallel
Strand 3	D	641	642	parallel

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There are 2 strands in DJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	486	487	first strand
Strand 2	D	497	498	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4BQ3

Analysis of interatomic Contacts of Structural Units in PDB entry:
4BQ3