Analysis of interatomic Contacts of Structural Units in PDB entry:
4BQE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BQE entry

There are 2 chains in PDB entry 4BQE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 15PRO 841
B
 LYS 15ASP 434
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 86 helices in PDB entry 4BQE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 41Right-handed alpha
Helix 2
2
A
50 81Right-handed alpha
Helix 3
3
A
97 105Right-handed alpha
Helix 4
4
A
107 118Right-handed alpha
Helix 5
5
A
121 127Right-handed alpha
Helix 6
6
A
137 153Right-handed alpha
Helix 7
7
A
253 257Right-handed 310
Helix 8
8
A
258 264Right-handed alpha
Helix 9
9
A
266 271Right-handed alpha
Helix 10
10
A
271 281Right-handed alpha
Helix 11
11
A
290 319Right-handed alpha
Helix 12
12
A
327 329Right-handed 310
Helix 13
13
A
330 334Right-handed alpha
Helix 14
14
A
346 357Right-handed alpha
Helix 15
15
A
362 373Right-handed alpha
Helix 16
16
A
382 386Right-handed 310
Helix 17
17
A
391 398Right-handed alpha
Helix 18
18
A
398 420Right-handed alpha
Helix 19
19
A
421 425Right-handed 310
Helix 20
20
A
426 431Right-handed alpha
Helix 21
21
A
444 452Right-handed alpha
Helix 22
22
A
459 469Right-handed alpha
Helix 23
23
A
471 478Right-handed alpha
Helix 24
24
A
491 498Right-handed alpha
Helix 25
25
A
499 511Right-handed alpha
Helix 26
26
A
513 517Right-handed 310
Helix 27
27
A
518 529Right-handed 310
Helix 28
28
A
531 558Right-handed alpha
Helix 29
29
A
575 578Right-handed 310
Helix 30
30
A
579 597Right-handed alpha
Helix 31
31
A
598 603Right-handed alpha
Helix 32
32
A
620 639Right-handed alpha
Helix 33
33
A
656 667Right-handed alpha
Helix 34
34
A
682 691Right-handed alpha
Helix 35
35
A
701 711Right-handed alpha
Helix 36
36
A
712 715Right-handed 310
Helix 37
37
A
724 734Right-handed alpha
Helix 38
38
A
740 752Right-handed alpha
Helix 39
39
A
760 765Right-handed alpha
Helix 40
40
A
766 768Right-handed 310
Helix 41
41
A
780 815Right-handed alpha
Helix 42
42
A
816 819Right-handed 310
Helix 43
43
A
820 832Right-handed alpha
Helix 44
44
B
26 41Right-handed alpha
Helix 45
45
B
50 81Right-handed alpha
Helix 46
46
B
97 105Right-handed alpha
Helix 47
47
B
107 118Right-handed alpha
Helix 48
48
B
121 127Right-handed alpha
Helix 49
49
B
137 153Right-handed alpha
Helix 50
50
B
253 257Right-handed 310
Helix 51
51
B
258 264Right-handed alpha
Helix 52
52
B
266 271Right-handed alpha
Helix 53
53
B
271 281Right-handed alpha
Helix 54
54
B
290 319Right-handed alpha
Helix 55
55
B
327 329Right-handed 310
Helix 56
56
B
330 334Right-handed alpha
Helix 57
57
B
346 357Right-handed alpha
Helix 58
58
B
362 373Right-handed alpha
Helix 59
59
B
382 386Right-handed 310
Helix 60
60
B
391 398Right-handed alpha
Helix 61
61
B
398 420Right-handed alpha
Helix 62
62
B
421 425Right-handed 310
Helix 63
63
B
426 431Right-handed alpha
Helix 64
64
B
444 452Right-handed alpha
Helix 65
65
B
459 469Right-handed alpha
Helix 66
66
B
471 478Right-handed alpha
Helix 67
67
B
491 498Right-handed alpha
Helix 68
68
B
499 511Right-handed alpha
Helix 69
69
B
513 517Right-handed 310
Helix 70
70
B
518 529Right-handed 310
Helix 71
71
B
531 558Right-handed alpha
Helix 72
72
B
575 578Right-handed 310
Helix 73
73
B
579 597Right-handed alpha
Helix 74
74
B
598 603Right-handed alpha
Helix 75
75
B
620 639Right-handed alpha
Helix 76
76
B
656 667Right-handed alpha
Helix 77
77
B
682 691Right-handed alpha
Helix 78
78
B
701 711Right-handed alpha
Helix 79
79
B
712 715Right-handed 310
Helix 80
80
B
724 734Right-handed alpha
Helix 81
81
B
740 752Right-handed alpha
Helix 82
82
B
760 765Right-handed alpha
Helix 83
83
B
766 768Right-handed 310
Helix 84
84
B
780 815Right-handed alpha
Helix 85
85
B
816 819Right-handed 310
Helix 86
86
B
820 832Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 4BQE. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 205first strand
Strand 2
A
223 235anti-parallel
Strand 3
A
242 251anti-parallel
Strand 4
A
157 162parallel
Strand 5
A
84 88parallel
Strand 6
A
335 340parallel
Strand 7
A
374 377parallel
Strand 8
A
454 457parallel
Strand 9
A
482 484parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 174first strand
Strand 2
A
177 181anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 211first strand
Strand 2
A
217 220anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 390first strand
Strand 2
A
441 443anti-parallel
Strand 3
A
433 434anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
647 652first strand
Strand 2
A
608 613parallel
Strand 3
A
566 571parallel
Strand 4
A
669 672parallel
Strand 5
A
694 697parallel
Strand 6
A
716 717parallel
Back to list of sheets
Back to top of page

There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 205first strand
Strand 2
B
223 235anti-parallel
Strand 3
B
242 251anti-parallel
Strand 4
B
157 162parallel
Strand 5
B
84 88parallel
Strand 6
B
335 340parallel
Strand 7
B
374 377parallel
Strand 8
B
454 457parallel
Strand 9
B
482 484parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 174first strand
Strand 2
B
177 181anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 211first strand
Strand 2
B
217 220anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
388 390first strand
Strand 2
B
441 443anti-parallel
Strand 3
B
433 434anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
647 652first strand
Strand 2
B
608 613parallel
Strand 3
B
566 571parallel
Strand 4
B
669 672parallel
Strand 5
B
694 697parallel
Strand 6
B
716 717parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il