Analysis of interatomic Contacts of Structural Units in PDB entry:
4BTM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BTM entry

There are 2 chains in PDB entry 4BTM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 45LYS 336
B
 ALA 45ALA 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 4BTM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
97 108Right-handed alpha
Helix 2
2
A
137 144Right-handed alpha
Helix 3
3
A
151 172Right-handed alpha
Helix 4
4
A
180 182Right-handed 310
Helix 5
5
A
231 236Right-handed alpha
Helix 6
6
A
241 259Right-handed alpha
Helix 7
7
A
268 279Right-handed alpha
Helix 8
8
A
280 286Right-handed 310
Helix 9
9
A
291 302Right-handed alpha
Helix 10
10
A
309 323Right-handed alpha
Helix 11
11
A
332 336Right-handed 310
Helix 12
12
B
97 108Right-handed alpha
Helix 13
13
B
137 144Right-handed alpha
Helix 14
14
B
151 172Right-handed alpha
Helix 15
15
B
180 182Right-handed 310
Helix 16
16
B
226 230Right-handed 310
Helix 17
17
B
231 236Right-handed alpha
Helix 18
18
B
241 259Right-handed alpha
Helix 19
19
B
268 279Right-handed alpha
Helix 20
20
B
280 286Right-handed 310
Helix 21
21
B
291 302Right-handed alpha
Helix 22
22
B
309 323Right-handed alpha
Helix 23
23
B
332 336Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 4BTM. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
58 65anti-parallel
Strand 3
A
71 77anti-parallel
Strand 4
A
83 90anti-parallel
Strand 5
A
126 132anti-parallel
Strand 6
A
117 122anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
205 206anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 186first strand
Strand 2
A
196 198anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
58 65anti-parallel
Strand 3
B
71 77anti-parallel
Strand 4
B
82 90anti-parallel
Strand 5
B
126 131anti-parallel
Strand 6
B
117 122anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 175first strand
Strand 2
B
205 206anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 186first strand
Strand 2
B
196 198anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il