Analysis of interatomic Contacts of Structural Units in PDB entry:
4BVH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BVH entry

There are 3 chains in PDB entry 4BVH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 121GLY 392
B
 GLY 121THR 391
C
 GLY 121LYS 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 4BVH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
124 134Right-handed alpha
Helix 2
2
A
146 153Right-handed 310
Helix 3
3
A
163 167Right-handed 310
Helix 4
4
A
175 180Right-handed 310
Helix 5
5
A
181 188Right-handed alpha
Helix 6
6
A
189 200Right-handed alpha
Helix 7
7
A
207 219Right-handed alpha
Helix 8
8
A
232 237Right-handed alpha
Helix 9
9
A
240 242Right-handed 310
Helix 10
10
A
265 274Right-handed alpha
Helix 11
11
A
299 303Right-handed 310
Helix 12
12
A
304 312Right-handed alpha
Helix 13
13
A
326 331Right-handed alpha
Helix 14
14
A
348 354Right-handed alpha
Helix 15
15
A
365 378Right-handed alpha
Helix 16
16
A
379 392Right-handed alpha
Helix 17
17
B
124 134Right-handed alpha
Helix 18
18
B
146 153Right-handed 310
Helix 19
19
B
163 167Right-handed 310
Helix 20
20
B
168 172Right-handed 310
Helix 21
21
B
175 180Right-handed 310
Helix 22
22
B
181 188Right-handed alpha
Helix 23
23
B
189 200Right-handed alpha
Helix 24
24
B
207 219Right-handed alpha
Helix 25
25
B
232 237Right-handed alpha
Helix 26
26
B
240 242Right-handed 310
Helix 27
27
B
265 273Right-handed alpha
Helix 28
28
B
299 303Right-handed 310
Helix 29
29
B
304 312Right-handed alpha
Helix 30
30
B
326 331Right-handed alpha
Helix 31
31
B
348 354Right-handed alpha
Helix 32
32
B
365 378Right-handed alpha
Helix 33
33
B
379 391Right-handed alpha
Helix 34
34
C
124 134Right-handed alpha
Helix 35
35
C
146 153Right-handed 310
Helix 36
36
C
163 168Right-handed 310
Helix 37
37
C
175 180Right-handed 310
Helix 38
38
C
181 186Right-handed alpha
Helix 39
39
C
189 200Right-handed alpha
Helix 40
40
C
207 219Right-handed alpha
Helix 41
41
C
232 237Right-handed alpha
Helix 42
42
C
240 242Right-handed 310
Helix 43
43
C
268 274Right-handed alpha
Helix 44
44
C
299 303Right-handed 310
Helix 45
45
C
304 312Right-handed alpha
Helix 46
46
C
327 333Right-handed 310
Helix 47
47
C
348 354Right-handed alpha
Helix 48
48
C
365 378Right-handed alpha
Helix 49
49
C
379 392Right-handed alpha
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There are 6 sheets in PDB entry 4BVH. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 246first strand
Strand 2
A
222 227parallel
Strand 3
A
140 144parallel
Strand 4
A
314 318parallel
Strand 5
A
340 344parallel
Strand 6
A
359 363parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
249 256anti-parallel
Strand 3
A
287 291anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 246first strand
Strand 2
B
222 227parallel
Strand 3
B
140 144parallel
Strand 4
B
314 318parallel
Strand 5
B
340 344parallel
Strand 6
B
359 363parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 264first strand
Strand 2
B
249 256anti-parallel
Strand 3
B
287 291anti-parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
244 246first strand
Strand 2
C
222 227parallel
Strand 3
C
140 144parallel
Strand 4
C
314 318parallel
Strand 5
C
340 344parallel
Strand 6
C
359 363parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
262 264first strand
Strand 2
C
249 256anti-parallel
Strand 3
C
287 291anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il