Analysis of interatomic Contacts of Structural Units in PDB entry:
4BVP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BVP entry

There are 2 chains in PDB entry 4BVP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 37HIS 401
B
 ASN 37HIS 401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 4BVP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 41Right-handed 310
Helix 2
2
A
84 88Right-handed 310
Helix 3
3
A
91 104Right-handed alpha
Helix 4
4
A
118 123Right-handed alpha
Helix 5
5
A
125 142Right-handed alpha
Helix 6
6
A
155 172Right-handed alpha
Helix 7
7
A
205 207Right-handed 310
Helix 8
8
A
230 236Right-handed alpha
Helix 9
9
A
241 245Right-handed 310
Helix 10
10
A
260 274Right-handed alpha
Helix 11
11
A
277 289Right-handed alpha
Helix 12
12
A
299 305Right-handed alpha
Helix 13
13
A
318 329Right-handed alpha
Helix 14
14
A
333 341Right-handed alpha
Helix 15
15
A
346 348Right-handed 310
Helix 16
16
A
349 362Right-handed alpha
Helix 17
17
A
377 381Right-handed 310
Helix 18
18
A
385 392Right-handed alpha
Helix 19
19
B
37 41Right-handed 310
Helix 20
20
B
84 88Right-handed 310
Helix 21
21
B
91 104Right-handed alpha
Helix 22
22
B
118 123Right-handed alpha
Helix 23
23
B
125 142Right-handed alpha
Helix 24
24
B
155 172Right-handed alpha
Helix 25
25
B
205 207Right-handed 310
Helix 26
26
B
230 236Right-handed alpha
Helix 27
27
B
241 245Right-handed 310
Helix 28
28
B
260 273Right-handed alpha
Helix 29
29
B
277 289Right-handed alpha
Helix 30
30
B
299 305Right-handed alpha
Helix 31
31
B
318 329Right-handed alpha
Helix 32
32
B
333 341Right-handed alpha
Helix 33
33
B
346 348Right-handed 310
Helix 34
34
B
349 362Right-handed alpha
Helix 35
35
B
377 381Right-handed 310
Helix 36
36
B
384 392Right-handed alpha
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There are 4 sheets in PDB entry 4BVP. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 81first strand
Strand 2
A
54 64anti-parallel
Strand 3
A
43 51anti-parallel
Strand 4
A
112 117parallel
Strand 5
A
147 153parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 214first strand
Strand 2
A
217 227anti-parallel
Strand 3
A
191 197anti-parallel
Strand 4
A
182 187anti-parallel
Strand 5
A
293 298parallel
Strand 6
A
372 375parallel
Strand 7
A
315 317anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 81first strand
Strand 2
B
54 64anti-parallel
Strand 3
B
43 51anti-parallel
Strand 4
B
112 117parallel
Strand 5
B
147 153parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 214first strand
Strand 2
B
217 227anti-parallel
Strand 3
B
191 197anti-parallel
Strand 4
B
182 187anti-parallel
Strand 5
B
293 298parallel
Strand 6
B
372 375parallel
Strand 7
B
315 317anti-parallel
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