Analysis of interatomic Contacts of Structural Units in PDB entry:
4BVU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BVU entry

There are 3 chains in PDB entry 4BVU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 26LEU 196
B
 ALA 2MET 147
C
 MET 201GLY 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4BVU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
61 81Right-handed alpha
Helix 2
2
A
110 114Right-handed 310
Helix 3
3
A
117 132Right-handed alpha
Helix 4
4
A
140 142Right-handed 310
Helix 5
5
A
161 168Right-handed alpha
Helix 6
6
A
172 194Right-handed alpha
Helix 7
7
B
2 16Right-handed alpha
Helix 8
8
B
86 90Right-handed 310
Helix 9
9
B
98 112Right-handed alpha
Helix 10
10
B
120 130Right-handed alpha
Helix 11
11
B
130 146Right-handed alpha
Helix 12
12
C
222 235Right-handed alpha
Helix 13
13
C
237 239Right-handed 310
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There are 4 sheets in PDB entry 4BVU. Click on sheet of interest to get list of strands forming it: AA, AB, BA, CA,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
39 43anti-parallel
Strand 3
A
50 55anti-parallel
Strand 4
A
93 99anti-parallel
Strand 5
A
85 90anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 105first strand
Strand 2
A
144 147anti-parallel
Strand 3
A
152 155anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 24first strand
Strand 2
B
32 38anti-parallel
Strand 3
B
49 55anti-parallel
Strand 4
B
66 69anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
212 216first strand
Strand 2
C
202 206anti-parallel
Strand 3
C
266 271parallel
Strand 4
C
241 244anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il