Analysis of interatomic Contacts of Structural Units in PDB entry:
4BY6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BY6 entry

There are 4 chains in PDB entry 4BY6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1567VAL 2079
B
 GLY 5MET 191
C
 THR 346LEU 560
D
 THR 1567LEU 1940
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 91 helices in PDB entry 4BY6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1567 1584Right-handed alpha
Helix 2
2
A
1590 1602Right-handed alpha
Helix 3
3
A
1608 1629Right-handed alpha
Helix 4
4
A
1637 1653Right-handed alpha
Helix 5
5
A
1660 1682Right-handed alpha
Helix 6
6
A
1689 1712Right-handed alpha
Helix 7
7
A
1716 1741Right-handed alpha
Helix 8
8
A
1746 1748Right-handed 310
Helix 9
9
A
1749 1758Right-handed alpha
Helix 10
10
A
1762 1767Right-handed alpha
Helix 11
11
A
1769 1773Right-handed 310
Helix 12
12
A
1774 1792Right-handed alpha
Helix 13
13
A
1800 1820Right-handed alpha
Helix 14
14
A
1820 1827Right-handed alpha
Helix 15
15
A
1827 1835Right-handed alpha
Helix 16
16
A
1839 1848Right-handed alpha
Helix 17
17
A
1865 1869Right-handed 310
Helix 18
18
A
1869 1874Right-handed 310
Helix 19
19
A
1881 1888Right-handed 310
Helix 20
20
A
1889 1899Right-handed alpha
Helix 21
21
A
1901 1916Right-handed alpha
Helix 22
22
A
1931 1953Right-handed alpha
Helix 23
23
A
1963 1975Right-handed alpha
Helix 24
24
A
1977 1991Right-handed alpha
Helix 25
25
A
1996 2012Right-handed alpha
Helix 26
26
A
2018 2035Right-handed alpha
Helix 27
27
A
2041 2053Right-handed alpha
Helix 28
28
A
2058 2061Right-handed 310
Helix 29
29
A
2062 2067Right-handed alpha
Helix 30
30
A
2068 2078Right-handed alpha
Helix 31
31
B
34 41Right-handed alpha
Helix 32
32
B
52 56Right-handed 310
Helix 33
33
B
75 79Right-handed 310
Helix 34
34
B
83 87Right-handed 310
Helix 35
35
B
100 105Right-handed alpha
Helix 36
36
B
108 119Right-handed alpha
Helix 37
37
B
122 135Right-handed alpha
Helix 38
38
C
352 354Right-handed 310
Helix 39
39
C
355 365Right-handed alpha
Helix 40
40
C
366 371Right-handed alpha
Helix 41
41
C
377 390Right-handed alpha
Helix 42
42
C
393 398Right-handed alpha
Helix 43
43
C
463 470Right-handed alpha
Helix 44
44
C
473 484Right-handed alpha
Helix 45
45
C
487 502Right-handed alpha
Helix 46
46
C
553 556Right-handed 310
Helix 47
47
D
1567 1584Right-handed alpha
Helix 48
48
D
1590 1603Right-handed alpha
Helix 49
49
D
1608 1629Right-handed alpha
Helix 50
50
D
1637 1653Right-handed alpha
Helix 51
51
D
1660 1682Right-handed alpha
Helix 52
52
D
1688 1712Right-handed alpha
Helix 53
53
D
1716 1741Right-handed alpha
Helix 54
54
D
1746 1748Right-handed 310
Helix 55
55
D
1749 1758Right-handed alpha
Helix 56
56
D
1762 1767Right-handed alpha
Helix 57
57
D
1769 1773Right-handed 310
Helix 58
58
D
1774 1792Right-handed alpha
Helix 59
59
D
1800 1820Right-handed alpha
Helix 60
60
D
1820 1827Right-handed alpha
Helix 61
61
D
1827 1835Right-handed alpha
Helix 62
62
D
1839 1848Right-handed alpha
Helix 63
63
D
1865 1869Right-handed 310
Helix 64
64
D
1869 1874Right-handed 310
Helix 65
65
D
1881 1888Right-handed 310
Helix 66
66
D
1889 1899Right-handed alpha
Helix 67
67
D
1901 1916Right-handed alpha
Helix 68
68
D
1931 1953Right-handed alpha
Helix 69
69
D
1963 1975Right-handed alpha
Helix 70
70
D
1977 1991Right-handed alpha
Helix 71
71
D
1996 2012Right-handed alpha
Helix 72
72
D
2018 2035Right-handed alpha
Helix 73
73
D
2041 2053Right-handed alpha
Helix 74
74
D
2062 2067Right-handed alpha
Helix 75
75
D
2068 2078Right-handed alpha
Helix 76
76
E
34 41Right-handed alpha
Helix 77
77
E
52 56Right-handed 310
Helix 78
78
E
75 79Right-handed 310
Helix 79
79
E
83 87Right-handed 310
Helix 80
80
E
100 105Right-handed alpha
Helix 81
81
E
108 119Right-handed alpha
Helix 82
82
E
122 135Right-handed alpha
Helix 83
83
F
352 354Right-handed 310
Helix 84
84
F
355 365Right-handed alpha
Helix 85
85
F
366 371Right-handed alpha
Helix 86
86
F
377 390Right-handed alpha
Helix 87
87
F
393 398Right-handed alpha
Helix 88
88
F
463 470Right-handed alpha
Helix 89
89
F
473 484Right-handed alpha
Helix 90
90
F
487 502Right-handed alpha
Helix 91
91
F
553 556Right-handed 310
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There are 12 sheets in PDB entry 4BY6. Click on sheet of interest to get list of strands forming it: AA, BA, BB, BC, BD, CA, A, EA, EB, EC, ED, FA,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1917 1921first strand
Strand 2
A
1926 1930anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 157first strand
Strand 2
B
163 172parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 186first strand
Strand 2
B
163 172anti-parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 191first strand
Strand 2
B
138 140anti-parallel
Strand 3
B
145 149anti-parallel
Strand 4
B
163 172anti-parallel
Strand 5
B
177 186anti-parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 191first strand
Strand 2
B
138 140anti-parallel
Strand 3
B
145 149anti-parallel
Strand 4
B
163 172anti-parallel
Strand 5
B
156 157parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
504 505first strand
Strand 2
C
512 515anti-parallel
Strand 3
C
532 535anti-parallel
Strand 4
C
543 545anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1917 1921first strand
Strand 2
D
1926 1930anti-parallel
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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
156 157first strand
Strand 2
E
163 172parallel
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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
177 186first strand
Strand 2
E
163 172anti-parallel
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There are 5 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
190 191first strand
Strand 2
E
138 140anti-parallel
Strand 3
E
145 149anti-parallel
Strand 4
E
163 172anti-parallel
Strand 5
E
177 186anti-parallel
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There are 5 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
190 191first strand
Strand 2
E
138 140anti-parallel
Strand 3
E
145 149anti-parallel
Strand 4
E
163 172anti-parallel
Strand 5
E
156 157parallel
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There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
504 505first strand
Strand 2
F
512 515anti-parallel
Strand 3
F
532 536anti-parallel
Strand 4
F
542 545anti-parallel
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