Analysis of interatomic Contacts of Structural Units in PDB entry:
4BY9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4BY9 entry

There are 18 chains in PDB entry 4BY9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	G 1	C 72
B	G 1	C 72
C	PHE 1	TYR 366
D	LYS 1	LYS 121
E	MET 1	PRO 227
F	PHE 1	TYR 366
G	LYS 1	LYS 121
H	MET 1	PRO 227
I	PHE 1	TYR 366
J	LYS 1	LYS 121
K	MET 1	PRO 227
L	PHE 1	TYR 366
M	LYS 1	LYS 121
N	MET 1	PRO 227
W	U 1	C 11
X	U 1	C 11
Y	U 1	C 11
Z	U 1	C 11

There are150 helices in PDB entry 4BY9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	C	27	38	Right-handed alpha
Helix 2	2	C	41	54	Right-handed alpha
Helix 3	3	C	63	73	Right-handed alpha
Helix 4	4	C	83	92	Right-handed alpha
Helix 5	5	C	93	96	Right-handed 310
Helix 6	6	C	101	116	Right-handed alpha
Helix 7	7	C	123	154	Right-handed alpha
Helix 8	8	C	159	164	Right-handed alpha
Helix 9	9	C	166	178	Right-handed alpha
Helix 10	10	C	179	183	Right-handed 310
Helix 11	11	C	184	191	Right-handed alpha
Helix 12	12	C	194	200	Right-handed alpha
Helix 13	13	C	201	206	Right-handed alpha
Helix 14	14	C	214	246	Right-handed alpha
Helix 15	15	C	252	257	Right-handed alpha
Helix 16	16	C	258	269	Right-handed alpha
Helix 17	17	C	271	277	Right-handed alpha
Helix 18	18	C	279	284	Right-handed alpha
Helix 19	19	C	289	298	Right-handed alpha
Helix 20	20	C	306	311	Right-handed 310
Helix 21	21	C	318	343	Right-handed alpha
Helix 22	22	C	347	366	Right-handed alpha
Helix 23	23	D	13	25	Right-handed alpha
Helix 24	24	D	33	43	Right-handed alpha
Helix 25	25	D	58	63	Right-handed alpha
Helix 26	26	D	63	71	Right-handed alpha
Helix 27	27	D	80	89	Right-handed alpha
Helix 28	28	D	102	104	Right-handed 310
Helix 29	29	D	105	120	Right-handed alpha
Helix 30	30	E	52	55	Right-handed 310
Helix 31	31	E	56	65	Right-handed alpha
Helix 32	32	E	85	96	Right-handed alpha
Helix 33	33	E	109	115	Right-handed 310
Helix 34	34	E	116	120	Right-handed 310
Helix 35	35	E	133	138	Right-handed 310
Helix 36	36	E	155	167	Right-handed alpha
Helix 37	37	E	180	184	Right-handed alpha
Helix 38	38	E	188	201	Right-handed alpha
Helix 39	39	F	27	37	Right-handed alpha
Helix 40	40	F	41	54	Right-handed alpha
Helix 41	41	F	63	73	Right-handed alpha
Helix 42	42	F	83	92	Right-handed alpha
Helix 43	43	F	92	98	Right-handed alpha
Helix 44	44	F	100	116	Right-handed alpha
Helix 45	45	F	123	154	Right-handed alpha
Helix 46	46	F	166	177	Right-handed alpha
Helix 47	47	F	179	183	Right-handed 310
Helix 48	48	F	184	190	Right-handed alpha
Helix 49	49	F	194	203	Right-handed alpha
Helix 50	50	F	216	245	Right-handed alpha
Helix 51	51	F	251	256	Right-handed alpha
Helix 52	52	F	258	270	Right-handed alpha
Helix 53	53	F	271	276	Right-handed alpha
Helix 54	54	F	279	284	Right-handed alpha
Helix 55	55	F	288	297	Right-handed alpha
Helix 56	56	F	306	310	Right-handed 310
Helix 57	57	F	311	316	Right-handed alpha
Helix 58	58	F	318	322	Right-handed 310
Helix 59	59	F	323	343	Right-handed alpha
Helix 60	60	F	347	365	Right-handed alpha
Helix 61	61	G	13	23	Right-handed alpha
Helix 62	62	G	33	43	Right-handed alpha
Helix 63	63	G	57	61	Right-handed 310
Helix 64	64	G	63	70	Right-handed alpha
Helix 65	65	G	80	88	Right-handed alpha
Helix 66	66	G	102	104	Right-handed 310
Helix 67	67	G	105	120	Right-handed alpha
Helix 68	68	H	57	65	Right-handed alpha
Helix 69	69	H	87	96	Right-handed alpha
Helix 70	70	H	107	113	Right-handed alpha
Helix 71	71	H	114	119	Right-handed alpha
Helix 72	72	H	133	138	Right-handed 310
Helix 73	73	H	155	167	Right-handed alpha
Helix 74	74	H	180	184	Right-handed alpha
Helix 75	75	H	188	201	Right-handed alpha
Helix 76	76	I	27	37	Right-handed alpha
Helix 77	77	I	41	55	Right-handed alpha
Helix 78	78	I	63	74	Right-handed alpha
Helix 79	79	I	83	90	Right-handed alpha
Helix 80	80	I	93	98	Right-handed alpha
Helix 81	81	I	100	116	Right-handed alpha
Helix 82	82	I	123	154	Right-handed alpha
Helix 83	83	I	157	161	Right-handed 310
Helix 84	84	I	166	177	Right-handed alpha
Helix 85	85	I	179	183	Right-handed 310
Helix 86	86	I	184	190	Right-handed alpha
Helix 87	87	I	194	206	Right-handed alpha
Helix 88	88	I	217	246	Right-handed alpha
Helix 89	89	I	252	257	Right-handed alpha
Helix 90	90	I	258	269	Right-handed alpha
Helix 91	91	I	271	278	Right-handed alpha
Helix 92	92	I	279	284	Right-handed alpha
Helix 93	93	I	289	297	Right-handed alpha
Helix 94	94	I	306	311	Right-handed 310
Helix 95	95	I	318	343	Right-handed alpha
Helix 96	96	I	347	366	Right-handed alpha
Helix 97	97	J	13	28	Right-handed alpha
Helix 98	98	J	33	43	Right-handed alpha
Helix 99	99	J	57	62	Right-handed 310
Helix 100	100	J	63	71	Right-handed alpha
Helix 101	101	J	80	88	Right-handed alpha
Helix 102	102	J	105	117	Right-handed alpha
Helix 103	103	K	52	55	Right-handed 310
Helix 104	104	K	56	64	Right-handed alpha
Helix 105	105	K	89	96	Right-handed alpha
Helix 106	106	K	110	118	Right-handed alpha
Helix 107	107	K	133	138	Right-handed 310
Helix 108	108	K	155	167	Right-handed alpha
Helix 109	109	K	181	183	Right-handed 310
Helix 110	110	K	188	201	Right-handed alpha
Helix 111	111	L	27	38	Right-handed alpha
Helix 112	112	L	41	54	Right-handed alpha
Helix 113	113	L	63	73	Right-handed alpha
Helix 114	114	L	83	90	Right-handed alpha
Helix 115	115	L	92	98	Right-handed alpha
Helix 116	116	L	100	116	Right-handed alpha
Helix 117	117	L	123	154	Right-handed alpha
Helix 118	118	L	159	164	Right-handed alpha
Helix 119	119	L	166	178	Right-handed alpha
Helix 120	120	L	179	183	Right-handed 310
Helix 121	121	L	185	190	Right-handed alpha
Helix 122	122	L	194	199	Right-handed alpha
Helix 123	123	L	201	205	Right-handed 310
Helix 124	124	L	218	247	Right-handed alpha
Helix 125	125	L	251	258	Right-handed alpha
Helix 126	126	L	258	270	Right-handed alpha
Helix 127	127	L	271	277	Right-handed alpha
Helix 128	128	L	279	284	Right-handed alpha
Helix 129	129	L	288	299	Right-handed alpha
Helix 130	130	L	306	311	Right-handed 310
Helix 131	131	L	313	317	Right-handed 310
Helix 132	132	L	318	343	Right-handed alpha
Helix 133	133	L	347	366	Right-handed alpha
Helix 134	134	M	13	28	Right-handed alpha
Helix 135	135	M	33	43	Right-handed alpha
Helix 136	136	M	57	61	Right-handed 310
Helix 137	137	M	63	70	Right-handed alpha
Helix 138	138	M	80	88	Right-handed alpha
Helix 139	139	M	102	104	Right-handed 310
Helix 140	140	M	105	118	Right-handed alpha
Helix 141	141	N	52	55	Right-handed 310
Helix 142	142	N	56	64	Right-handed alpha
Helix 143	143	N	87	96	Right-handed alpha
Helix 144	144	N	107	112	Right-handed alpha
Helix 145	145	N	113	115	Right-handed 310
Helix 146	146	N	116	120	Right-handed 310
Helix 147	147	N	133	138	Right-handed 310
Helix 148	148	N	155	167	Right-handed alpha
Helix 149	149	N	181	183	Right-handed 310
Helix 150	150	N	188	201	Right-handed alpha

There are 20 sheets in PDB entry 4BY9. Click on sheet of interest to get list of strands forming it: CA, CB, A, EA, EB, FA, FB, GA, HA, HB, IA, IB, JA, KA, KB, LA, LB, MA, NA, NB,

There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	5	first strand
Strand 2	C	8	12	anti-parallel
Strand 3	C	18	22	anti-parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	61	first strand
Strand 2	C	76	79	parallel

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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	96	101	anti-parallel
Strand 3	D	48	52	anti-parallel
Strand 4	D	75	78	parallel

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There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	13	16	anti-parallel
Strand 3	E	23	27	anti-parallel
Strand 4	E	46	50	anti-parallel
Strand 5	E	40	43	anti-parallel

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There are 7 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	124	128	first strand
Strand 2	E	100	105	parallel
Strand 3	E	76	80	parallel
Strand 4	E	144	149	parallel
Strand 5	E	168	179	parallel
Strand 6	E	219	225	anti-parallel
Strand 7	E	205	211	anti-parallel

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There are 3 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	5	first strand
Strand 2	F	8	12	anti-parallel
Strand 3	F	18	23	anti-parallel

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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	61	first strand
Strand 2	F	78	79	parallel

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There are 4 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	32	first strand
Strand 2	G	96	101	anti-parallel
Strand 3	G	48	52	anti-parallel
Strand 4	G	75	78	parallel

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There are 5 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	12	16	anti-parallel
Strand 3	H	22	27	anti-parallel
Strand 4	H	47	50	anti-parallel
Strand 5	H	40	42	anti-parallel

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There are 7 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	124	128	first strand
Strand 2	H	100	105	parallel
Strand 3	H	76	80	parallel
Strand 4	H	144	149	parallel
Strand 5	H	168	179	parallel
Strand 6	H	219	225	anti-parallel
Strand 7	H	205	211	anti-parallel

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There are 3 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	2	3	first strand
Strand 2	I	9	12	anti-parallel
Strand 3	I	18	22	anti-parallel

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There are 2 strands in IB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	59	61	first strand
Strand 2	I	77	79	parallel

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There are 4 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	29	32	first strand
Strand 2	J	96	101	anti-parallel
Strand 3	J	48	52	anti-parallel
Strand 4	J	75	78	parallel

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There are 5 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	6	first strand
Strand 2	K	12	16	anti-parallel
Strand 3	K	22	27	anti-parallel
Strand 4	K	47	50	anti-parallel
Strand 5	K	40	42	anti-parallel

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There are 7 strands in KB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	124	128	first strand
Strand 2	K	100	105	parallel
Strand 3	K	76	80	parallel
Strand 4	K	144	149	parallel
Strand 5	K	168	179	parallel
Strand 6	K	219	226	anti-parallel
Strand 7	K	205	211	anti-parallel

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There are 3 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	2	5	first strand
Strand 2	L	8	12	anti-parallel
Strand 3	L	18	23	anti-parallel

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There are 2 strands in LB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	60	61	first strand
Strand 2	L	78	79	parallel

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There are 4 strands in MA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	29	32	first strand
Strand 2	M	96	101	anti-parallel
Strand 3	M	48	52	anti-parallel
Strand 4	M	75	78	parallel

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There are 5 strands in NA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	6	first strand
Strand 2	N	12	16	anti-parallel
Strand 3	N	23	27	anti-parallel
Strand 4	N	46	50	anti-parallel
Strand 5	N	40	43	anti-parallel

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There are 7 strands in NB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	124	128	first strand
Strand 2	N	100	105	parallel
Strand 3	N	76	80	parallel
Strand 4	N	144	149	parallel
Strand 5	N	168	179	parallel
Strand 6	N	219	225	anti-parallel
Strand 7	N	205	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4BY9

Analysis of interatomic Contacts of Structural Units in PDB entry:
4BY9