Analysis of interatomic Contacts of Structural Units in PDB entry:
4BYF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BYF entry

There are 3 chains in PDB entry 4BYF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 9LEU 720
B
 MET 1ALA 148
C
 ARG 10ASN 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 4BYF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 19Right-handed 310
Helix 2
2
A
24 38Right-handed alpha
Helix 3
3
A
62 70Right-handed alpha
Helix 4
4
A
73 77Right-handed 310
Helix 5
5
A
80 95Right-handed alpha
Helix 6
6
A
110 126Right-handed alpha
Helix 7
7
A
134 150Right-handed alpha
Helix 8
8
A
189 193Right-handed 310
Helix 9
9
A
202 212Right-handed alpha
Helix 10
10
A
213 220Right-handed alpha
Helix 11
11
A
225 229Right-handed 310
Helix 12
12
A
244 259Right-handed alpha
Helix 13
13
A
262 282Right-handed alpha
Helix 14
14
A
297 308Right-handed alpha
Helix 15
15
A
310 319Right-handed alpha
Helix 16
16
A
335 367Right-handed alpha
Helix 17
17
A
397 419Right-handed alpha
Helix 18
18
A
419 430Right-handed alpha
Helix 19
19
A
441 450Right-handed alpha
Helix 20
20
A
454 462Right-handed alpha
Helix 21
21
A
470 482Right-handed alpha
Helix 22
22
A
522 528Right-handed alpha
Helix 23
23
A
532 541Right-handed alpha
Helix 24
24
A
544 551Right-handed alpha
Helix 25
25
A
564 582Right-handed alpha
Helix 26
26
A
603 615Right-handed alpha
Helix 27
27
A
615 626Right-handed alpha
Helix 28
28
A
633 641Right-handed alpha
Helix 29
29
A
642 644Right-handed 310
Helix 30
30
A
654 667Right-handed alpha
Helix 31
31
A
684 719Right-handed alpha
Helix 32
32
B
6 20Right-handed alpha
Helix 33
33
B
32 40Right-handed alpha
Helix 34
34
B
45 57Right-handed alpha
Helix 35
35
B
66 77Right-handed alpha
Helix 36
36
B
82 94Right-handed alpha
Helix 37
37
B
103 113Right-handed alpha
Helix 38
38
B
118 130Right-handed alpha
Helix 39
39
B
139 148Right-handed alpha
Helix 40
40
C
16 19Right-handed 310
Helix 41
41
C
24 38Right-handed alpha
Helix 42
42
C
62 70Right-handed alpha
Helix 43
43
C
73 77Right-handed 310
Helix 44
44
C
80 95Right-handed alpha
Helix 45
45
C
110 126Right-handed alpha
Helix 46
46
C
135 150Right-handed alpha
Helix 47
47
C
189 193Right-handed 310
Helix 48
48
C
202 212Right-handed alpha
Helix 49
49
C
213 220Right-handed alpha
Helix 50
50
C
225 229Right-handed 310
Helix 51
51
C
244 259Right-handed alpha
Helix 52
52
C
262 282Right-handed alpha
Helix 53
53
C
297 308Right-handed alpha
Helix 54
54
C
310 319Right-handed alpha
Helix 55
55
C
335 367Right-handed alpha
Helix 56
56
C
397 419Right-handed alpha
Helix 57
57
C
419 429Right-handed alpha
Helix 58
58
C
441 450Right-handed alpha
Helix 59
59
C
454 462Right-handed alpha
Helix 60
60
C
470 482Right-handed alpha
Helix 61
61
C
522 528Right-handed alpha
Helix 62
62
C
532 541Right-handed alpha
Helix 63
63
C
544 551Right-handed alpha
Helix 64
64
C
564 582Right-handed alpha
Helix 65
65
C
603 615Right-handed alpha
Helix 66
66
C
615 626Right-handed alpha
Helix 67
67
C
633 641Right-handed alpha
Helix 68
68
C
642 644Right-handed 310
Helix 69
69
C
654 667Right-handed alpha
Helix 70
70
C
684 719Right-handed alpha
Helix 71
71
D
6 20Right-handed alpha
Helix 72
72
D
32 40Right-handed alpha
Helix 73
73
D
45 57Right-handed alpha
Helix 74
74
D
66 79Right-handed alpha
Helix 75
75
D
82 94Right-handed alpha
Helix 76
76
D
103 113Right-handed alpha
Helix 77
77
D
118 130Right-handed alpha
Helix 78
78
D
139 148Right-handed alpha
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There are 14 sheets in PDB entry 4BYF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, CA, CB, CC, CD, CE, A, DB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
48 52anti-parallel
Strand 3
A
584 591parallel
Strand 4
A
99 104parallel
Strand 5
A
380 386parallel
Strand 6
A
164 171anti-parallel
Strand 7
A
177 185anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
160 161anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 322first strand
Strand 2
A
331 333anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 489first strand
Strand 2
A
506 511anti-parallel
Strand 3
A
514 519anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
629 632first strand
Strand 2
A
679 682anti-parallel
Strand 3
A
673 675anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 29first strand
Strand 2
B
63 65anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 102first strand
Strand 2
B
136 138anti-parallel
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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 45first strand
Strand 2
C
48 52anti-parallel
Strand 3
C
584 591parallel
Strand 4
C
99 104parallel
Strand 5
C
380 386parallel
Strand 6
C
164 171anti-parallel
Strand 7
C
177 185anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
151 152first strand
Strand 2
C
160 161anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
320 322first strand
Strand 2
C
331 333anti-parallel
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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
488 490first strand
Strand 2
C
506 511anti-parallel
Strand 3
C
514 519anti-parallel
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There are 3 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
629 632first strand
Strand 2
C
679 682anti-parallel
Strand 3
C
673 675anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
27 29first strand
Strand 2
D
63 65anti-parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
100 102first strand
Strand 2
D
136 138anti-parallel
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