Analysis of interatomic Contacts of Structural Units in PDB entry:
4C00


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4C00 entry

There is 1 chain in PDB entry 4C00 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 25LEU 577
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 4C00. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 44Right-handed alpha
Helix 2
2
A
57 71Right-handed alpha
Helix 3
3
A
115 119Right-handed 310
Helix 4
4
A
121 128Right-handed alpha
Helix 5
5
A
139 156Right-handed alpha
Helix 6
6
A
203 208Right-handed alpha
Helix 7
7
A
220 233Right-handed alpha
Helix 8
8
A
245 248Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 4C00. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AE,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 29first strand
Strand 2
A
94 99parallel
Strand 3
A
78 82anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 114first strand
Strand 2
A
176 184parallel
Strand 3
A
162 171anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 197first strand
Strand 2
A
256 262parallel
Strand 3
A
236 243anti-parallel
Back to list of sheets
Back to top of page

There are 17 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 276first strand
Strand 2
A
280 288anti-parallel
Strand 3
A
297 305anti-parallel
Strand 4
A
308 318anti-parallel
Strand 5
A
326 339anti-parallel
Strand 6
A
342 357anti-parallel
Strand 7
A
361 376anti-parallel
Strand 8
A
379 398anti-parallel
Strand 9
A
404 416anti-parallel
Strand 10
A
426 439anti-parallel
Strand 11
A
442 456anti-parallel
Strand 12
A
497 511anti-parallel
Strand 13
A
514 526anti-parallel
Strand 14
A
535 546anti-parallel
Strand 15
A
549 558anti-parallel
Strand 16
A
568 573anti-parallel
Strand 17
A
267 275anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il