Analysis of interatomic Contacts of Structural Units in PDB entry:
4C0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4C0D entry

There are 3 chains in PDB entry 4C0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 1842PHE 2353
B
 MET 350PHE 540
C
 LEU 607GLU 748
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 4C0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1848 1865Right-handed alpha
Helix 2
2
A
1872 1885Right-handed alpha
Helix 3
3
A
1892 1919Right-handed alpha
Helix 4
4
A
1925 1948Right-handed alpha
Helix 5
5
A
1956 1981Right-handed alpha
Helix 6
6
A
1988 2001Right-handed alpha
Helix 7
7
A
2006 2010Right-handed alpha
Helix 8
8
A
2012 2025Right-handed alpha
Helix 9
9
A
2035 2042Right-handed alpha
Helix 10
10
A
2045 2052Right-handed alpha
Helix 11
11
A
2061 2079Right-handed alpha
Helix 12
12
A
2086 2105Right-handed alpha
Helix 13
13
A
2107 2112Right-handed alpha
Helix 14
14
A
2114 2120Right-handed alpha
Helix 15
15
A
2126 2133Right-handed alpha
Helix 16
16
A
2174 2186Right-handed alpha
Helix 17
17
A
2191 2199Right-handed alpha
Helix 18
18
A
2212 2233Right-handed alpha
Helix 19
19
A
2246 2257Right-handed alpha
Helix 20
20
A
2260 2271Right-handed alpha
Helix 21
21
A
2279 2293Right-handed alpha
Helix 22
22
A
2298 2313Right-handed alpha
Helix 23
23
A
2320 2331Right-handed alpha
Helix 24
24
A
2347 2352Right-handed alpha
Helix 25
25
B
357 367Right-handed alpha
Helix 26
26
B
441 450Right-handed alpha
Helix 27
27
B
455 466Right-handed alpha
Helix 28
28
C
609 621Right-handed alpha
Helix 29
29
C
660 665Right-handed alpha
Helix 30
30
C
668 677Right-handed alpha
Helix 31
31
C
682 693Right-handed alpha
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There are 4 sheets in PDB entry 4C0D. Click on sheet of interest to get list of strands forming it: BA, BB, CA, CB,

There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
470 472first strand
Strand 2
B
477 481anti-parallel
Strand 3
B
494 503anti-parallel
Strand 4
B
508 517anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
488 490first strand
Strand 2
B
494 503anti-parallel
Strand 3
B
508 517anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
697 699first strand
Strand 2
C
704 708anti-parallel
Strand 3
C
719 728anti-parallel
Strand 4
C
733 743anti-parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
713 715first strand
Strand 2
C
719 728anti-parallel
Strand 3
C
733 743anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il