Analysis of interatomic Contacts of Structural Units in PDB entry:
4C0F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4C0F entry

There are 4 chains in PDB entry 4C0F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 433PRO 528
B
 GLN 424HIS 526
C
 GLY 425ALA 536
D
 GLU 441PHE 540
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 4C0F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
441 450Right-handed alpha
Helix 2
2
A
453 466Right-handed alpha
Helix 3
3
B
425 437Right-handed alpha
Helix 4
4
B
441 449Right-handed alpha
Helix 5
5
B
453 466Right-handed alpha
Helix 6
6
C
429 436Right-handed alpha
Helix 7
7
C
441 450Right-handed alpha
Helix 8
8
C
453 466Right-handed alpha
Helix 9
9
D
442 450Right-handed alpha
Helix 10
10
D
453 466Right-handed alpha
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There are 8 sheets in PDB entry 4C0F. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 472first strand
Strand 2
A
477 481anti-parallel
Strand 3
A
494 503anti-parallel
Strand 4
A
508 517anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 490first strand
Strand 2
A
494 503anti-parallel
Strand 3
A
508 517anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
470 472first strand
Strand 2
B
477 481anti-parallel
Strand 3
B
494 503anti-parallel
Strand 4
B
508 517anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
488 490first strand
Strand 2
B
494 503anti-parallel
Strand 3
B
508 517anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
470 472first strand
Strand 2
C
477 481anti-parallel
Strand 3
C
494 503anti-parallel
Strand 4
C
508 517anti-parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
488 490first strand
Strand 2
C
494 503anti-parallel
Strand 3
C
508 517anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
470 472first strand
Strand 2
D
477 481anti-parallel
Strand 3
D
494 503anti-parallel
Strand 4
D
508 517anti-parallel
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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
488 490first strand
Strand 2
D
494 503anti-parallel
Strand 3
D
508 517anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il