Analysis of interatomic Contacts of Structural Units in PDB entry:
4C0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4C0J entry

There is 1 chain in PDB entry 4C0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 206HIS 609
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4C0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
208 223Right-handed alpha
Helix 2
2
A
231 244Right-handed alpha
Helix 3
3
A
248 263Right-handed alpha
Helix 4
4
A
274 285Right-handed alpha
Helix 5
5
A
289 300Right-handed alpha
Helix 6
6
A
309 314Right-handed alpha
Helix 7
7
A
328 342Right-handed alpha
Helix 8
8
A
351 359Right-handed alpha
Helix 9
9
A
360 362Right-handed 310
Helix 10
10
A
372 377Right-handed alpha
Helix 11
11
A
388 402Right-handed alpha
Helix 12
12
A
402 413Right-handed alpha
Helix 13
13
A
414 420Right-handed alpha
Helix 14
14
A
422 425Right-handed 310
Helix 15
15
A
458 465Right-handed alpha
Helix 16
16
A
466 468Right-handed 310
Helix 17
17
A
514 519Right-handed alpha
Helix 18
18
A
534 546Right-handed alpha
Helix 19
19
A
572 580Right-handed alpha
Helix 20
20
A
595 606Right-handed alpha
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There are 4 sheets in PDB entry 4C0J. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
272 273anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 327first strand
Strand 2
A
427 431anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 350first strand
Strand 2
A
386 387anti-parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
485 492first strand
Strand 2
A
495 503anti-parallel
Strand 3
A
446 452parallel
Strand 4
A
522 528parallel
Strand 5
A
553 558parallel
Strand 6
A
586 588parallel
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