Analysis of interatomic Contacts of Structural Units in PDB entry:
4C0Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4C0Z entry

There are 6 chains in PDB entry 4C0Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 13	PRO 220
B	GLN 12	VAL 219
C	SER 13	VAL 219
D	SER 13	PRO 220
E	VAL 14	VAL 219
F	GLN 12	GLU 186

There are 84 helices in PDB entry 4C0Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	87	95	Right-handed alpha
Helix 2	2	A	104	116	Right-handed alpha
Helix 3	3	A	129	146	Right-handed alpha
Helix 4	4	A	152	156	Right-handed 310
Helix 5	5	A	157	165	Right-handed alpha
Helix 6	6	A	167	182	Right-handed alpha
Helix 7	7	A	183	189	Right-handed alpha
Helix 8	8	B	87	95	Right-handed alpha
Helix 9	9	B	99	103	Right-handed 310
Helix 10	10	B	104	116	Right-handed alpha
Helix 11	11	B	129	146	Right-handed alpha
Helix 12	12	B	152	156	Right-handed 310
Helix 13	13	B	157	165	Right-handed alpha
Helix 14	14	B	167	182	Right-handed alpha
Helix 15	15	B	183	189	Right-handed alpha
Helix 16	16	C	87	95	Right-handed alpha
Helix 17	17	C	99	103	Right-handed 310
Helix 18	18	C	104	116	Right-handed alpha
Helix 19	19	C	129	146	Right-handed alpha
Helix 20	20	C	157	165	Right-handed alpha
Helix 21	21	C	167	182	Right-handed alpha
Helix 22	22	C	183	189	Right-handed alpha
Helix 23	23	D	87	95	Right-handed alpha
Helix 24	24	D	104	116	Right-handed alpha
Helix 25	25	D	129	146	Right-handed alpha
Helix 26	26	D	152	156	Right-handed 310
Helix 27	27	D	157	165	Right-handed alpha
Helix 28	28	D	167	182	Right-handed alpha
Helix 29	29	D	183	189	Right-handed alpha
Helix 30	30	E	87	95	Right-handed alpha
Helix 31	31	E	104	116	Right-handed alpha
Helix 32	32	E	129	146	Right-handed alpha
Helix 33	33	E	152	156	Right-handed 310
Helix 34	34	E	157	165	Right-handed alpha
Helix 35	35	E	167	182	Right-handed alpha
Helix 36	36	E	183	189	Right-handed alpha
Helix 37	37	F	87	95	Right-handed alpha
Helix 38	38	F	104	116	Right-handed alpha
Helix 39	39	F	129	146	Right-handed alpha
Helix 40	40	F	152	156	Right-handed 310
Helix 41	41	F	157	165	Right-handed alpha
Helix 42	42	F	167	182	Right-handed alpha
Helix 43	43	F	183	188	Right-handed alpha
Helix 44	44	G	87	95	Right-handed alpha
Helix 45	45	G	104	116	Right-handed alpha
Helix 46	46	G	129	146	Right-handed alpha
Helix 47	47	G	152	156	Right-handed 310
Helix 48	48	G	157	165	Right-handed alpha
Helix 49	49	G	167	182	Right-handed alpha
Helix 50	50	G	183	189	Right-handed alpha
Helix 51	51	H	87	95	Right-handed alpha
Helix 52	52	H	104	116	Right-handed alpha
Helix 53	53	H	129	146	Right-handed alpha
Helix 54	54	H	152	156	Right-handed 310
Helix 55	55	H	157	165	Right-handed alpha
Helix 56	56	H	167	182	Right-handed alpha
Helix 57	57	H	183	189	Right-handed alpha
Helix 58	58	I	87	95	Right-handed alpha
Helix 59	59	I	104	116	Right-handed alpha
Helix 60	60	I	129	146	Right-handed alpha
Helix 61	61	I	152	156	Right-handed 310
Helix 62	62	I	157	165	Right-handed alpha
Helix 63	63	I	167	182	Right-handed alpha
Helix 64	64	I	183	189	Right-handed alpha
Helix 65	65	J	87	95	Right-handed alpha
Helix 66	66	J	104	116	Right-handed alpha
Helix 67	67	J	129	146	Right-handed alpha
Helix 68	68	J	152	156	Right-handed 310
Helix 69	69	J	157	165	Right-handed alpha
Helix 70	70	J	167	182	Right-handed alpha
Helix 71	71	J	183	189	Right-handed alpha
Helix 72	72	K	87	95	Right-handed alpha
Helix 73	73	K	104	116	Right-handed alpha
Helix 74	74	K	129	146	Right-handed alpha
Helix 75	75	K	152	156	Right-handed 310
Helix 76	76	K	157	165	Right-handed alpha
Helix 77	77	K	167	182	Right-handed alpha
Helix 78	78	K	183	189	Right-handed alpha
Helix 79	79	L	87	95	Right-handed alpha
Helix 80	80	L	104	116	Right-handed alpha
Helix 81	81	L	129	146	Right-handed alpha
Helix 82	82	L	152	156	Right-handed 310
Helix 83	83	L	167	182	Right-handed alpha
Helix 84	84	L	183	189	Right-handed alpha

There are 12 sheets in PDB entry 4C0Z. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA, FA, GA, HA, IA, JA, KA, LA,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	59	first strand
Strand 2	A	48	51	anti-parallel
Strand 3	A	26	30	anti-parallel
Strand 4	A	79	85	anti-parallel
Strand 5	A	198	205	anti-parallel
Strand 6	A	212	218	anti-parallel
Strand 7	A	61	63	anti-parallel

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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	B	48	51	anti-parallel
Strand 3	B	26	30	anti-parallel
Strand 4	B	79	85	anti-parallel
Strand 5	B	198	205	anti-parallel
Strand 6	B	212	218	anti-parallel
Strand 7	B	61	63	anti-parallel

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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	59	first strand
Strand 2	C	48	51	anti-parallel
Strand 3	C	26	30	anti-parallel
Strand 4	C	79	85	anti-parallel
Strand 5	C	198	205	anti-parallel
Strand 6	C	212	218	anti-parallel
Strand 7	C	61	63	anti-parallel

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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	59	first strand
Strand 2	D	48	51	anti-parallel
Strand 3	D	26	30	anti-parallel
Strand 4	D	79	85	anti-parallel
Strand 5	D	198	205	anti-parallel
Strand 6	D	212	218	anti-parallel
Strand 7	D	61	63	anti-parallel

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There are 7 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	59	first strand
Strand 2	E	48	51	anti-parallel
Strand 3	E	26	30	anti-parallel
Strand 4	E	79	85	anti-parallel
Strand 5	E	198	205	anti-parallel
Strand 6	E	212	218	anti-parallel
Strand 7	E	61	63	anti-parallel

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There are 7 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	59	first strand
Strand 2	F	48	51	anti-parallel
Strand 3	F	26	30	anti-parallel
Strand 4	F	79	85	anti-parallel
Strand 5	F	198	205	anti-parallel
Strand 6	F	212	218	anti-parallel
Strand 7	F	61	63	anti-parallel

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There are 7 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	58	59	first strand
Strand 2	G	48	51	anti-parallel
Strand 3	G	26	30	anti-parallel
Strand 4	G	79	85	anti-parallel
Strand 5	G	198	205	anti-parallel
Strand 6	G	212	218	anti-parallel
Strand 7	G	61	63	anti-parallel

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There are 7 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	59	first strand
Strand 2	H	48	51	anti-parallel
Strand 3	H	26	30	anti-parallel
Strand 4	H	79	85	anti-parallel
Strand 5	H	198	205	anti-parallel
Strand 6	H	212	218	anti-parallel
Strand 7	H	61	63	anti-parallel

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There are 7 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	58	59	first strand
Strand 2	I	48	51	anti-parallel
Strand 3	I	26	30	anti-parallel
Strand 4	I	79	85	anti-parallel
Strand 5	I	198	205	anti-parallel
Strand 6	I	212	218	anti-parallel
Strand 7	I	61	63	anti-parallel

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There are 7 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	58	59	first strand
Strand 2	J	48	51	anti-parallel
Strand 3	J	26	30	anti-parallel
Strand 4	J	79	85	anti-parallel
Strand 5	J	198	205	anti-parallel
Strand 6	J	212	218	anti-parallel
Strand 7	J	61	63	anti-parallel

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There are 7 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	58	59	first strand
Strand 2	K	48	51	anti-parallel
Strand 3	K	26	30	anti-parallel
Strand 4	K	79	85	anti-parallel
Strand 5	K	199	205	anti-parallel
Strand 6	K	212	217	anti-parallel
Strand 7	K	61	63	anti-parallel

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There are 7 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	58	59	first strand
Strand 2	L	48	51	anti-parallel
Strand 3	L	26	30	anti-parallel
Strand 4	L	79	85	anti-parallel
Strand 5	L	198	205	anti-parallel
Strand 6	L	212	218	anti-parallel
Strand 7	L	61	63	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4C0Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
4C0Z