Analysis of interatomic Contacts of Structural Units in PDB entry:
4C10

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4C10 entry

There are 6 chains in PDB entry 4C10 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
4	UNK 1	UNK 217
5	UNK 219	UNK 438
A	ASP 2	GLY 298
B	ASP 11	GLN 254
C	GLY 1	GLN 242
D	HIS 13	LYS 69

There are 35 helices in PDB entry 4C10. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	4	83	87	Right-handed 310
Helix 2	2	4	125	131	Right-handed alpha
Helix 3	3	4	187	192	Right-handed alpha
Helix 4	4	5	246	250	Right-handed 310
Helix 5	5	5	280	283	Right-handed 310
Helix 6	6	5	305	308	Right-handed 310
Helix 7	7	5	353	356	Right-handed 310
Helix 8	8	5	381	383	Right-handed 310
Helix 9	9	5	412	416	Right-handed alpha
Helix 10	10	5	425	428	Right-handed 310
Helix 11	11	A	4	9	Right-handed alpha
Helix 12	12	A	49	53	Right-handed 310
Helix 13	13	A	59	64	Right-handed alpha
Helix 14	14	A	75	78	Right-handed 310
Helix 15	15	A	79	85	Right-handed alpha
Helix 16	16	A	112	115	Right-handed 310
Helix 17	17	A	116	124	Right-handed alpha
Helix 18	18	A	168	173	Right-handed 310
Helix 19	19	A	215	222	Right-handed 310
Helix 20	20	A	225	229	Right-handed 310
Helix 21	21	B	56	60	Right-handed 310
Helix 22	22	B	82	86	Right-handed alpha
Helix 23	23	B	89	98	Right-handed alpha
Helix 24	24	B	147	152	Right-handed alpha
Helix 25	25	B	153	157	Right-handed 310
Helix 26	26	B	162	166	Right-handed 310
Helix 27	27	B	171	178	Right-handed 310
Helix 28	28	C	43	48	Right-handed alpha
Helix 29	29	C	64	70	Right-handed 310
Helix 30	30	C	94	98	Right-handed 310
Helix 31	31	C	99	106	Right-handed alpha
Helix 32	32	C	145	150	Right-handed alpha
Helix 33	33	C	184	190	Right-handed 310
Helix 34	34	D	36	39	Right-handed 310
Helix 35	35	D	50	55	Right-handed alpha

There are 26 sheets in PDB entry 4C10. Click on sheet of interest to get list of strands forming it: 4A, 4B, 4C, 4D, 4E, 5A, 5B, 5C, 5D, 5E, 5F, AA, AB, AC, CA, AD, AE, AF, CB, AG, BA, BB, BC, CC, CD, A,

There are 4 strands in 4A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	4	7	first strand
Strand 2	4	19	25	anti-parallel
Strand 3	4	74	79	anti-parallel
Strand 4	4	66	71	anti-parallel

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There are 5 strands in 4B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	10	13	first strand
Strand 2	4	106	110	parallel
Strand 3	4	88	94	anti-parallel
Strand 4	4	37	42	anti-parallel
Strand 5	4	49	52	anti-parallel

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There are 2 strands in 4C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	30	31	first strand
Strand 2	4	34	35	anti-parallel

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There are 4 strands in 4D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	118	122	first strand
Strand 2	4	133	143	anti-parallel
Strand 3	4	177	186	anti-parallel
Strand 4	4	163	168	anti-parallel

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There are 4 strands in 4E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	157	159	first strand
Strand 2	4	148	154	anti-parallel
Strand 3	4	195	202	anti-parallel
Strand 4	4	209	214	anti-parallel

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There are 4 strands in 5A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	221	225	first strand
Strand 2	5	236	243	anti-parallel
Strand 3	5	296	301	anti-parallel
Strand 4	5	286	291	anti-parallel

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There are 6 strands in 5B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	228	230	first strand
Strand 2	5	332	336	parallel
Strand 3	5	310	316	anti-parallel
Strand 4	5	252	258	anti-parallel
Strand 5	5	262	269	anti-parallel
Strand 6	5	276	278	anti-parallel

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There are 4 strands in 5C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	345	349	first strand
Strand 2	5	360	368	anti-parallel
Strand 3	5	399	411	anti-parallel
Strand 4	5	394	396	parallel

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There are 4 strands in 5D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	345	349	first strand
Strand 2	5	360	368	anti-parallel
Strand 3	5	399	411	anti-parallel
Strand 4	5	388	390	anti-parallel

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There are 2 strands in 5E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	394	396	first strand
Strand 2	5	399	411	parallel

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There are 3 strands in 5F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	376	379	first strand
Strand 2	5	419	424	anti-parallel
Strand 3	5	429	434	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	25	first strand
Strand 2	D	47	48	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	C	164	169	anti-parallel
Strand 3	C	115	121	anti-parallel
Strand 4	C	211	220	anti-parallel
Strand 5	C	71	74	anti-parallel

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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	C	164	169	anti-parallel
Strand 3	C	115	121	anti-parallel
Strand 4	C	211	220	anti-parallel
Strand 5	C	51	53	parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	74	first strand
Strand 2	C	211	220	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	95	first strand
Strand 2	A	247	263	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	192	first strand
Strand 2	A	126	140	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	202	first strand
Strand 2	A	126	140	anti-parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	A	247	263	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	110	first strand
Strand 2	A	232	237	anti-parallel
Strand 3	A	150	156	anti-parallel
Strand 4	A	178	182	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	18	first strand
Strand 2	B	21	25	anti-parallel

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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	190	195	parallel
Strand 3	B	99	111	anti-parallel
Strand 4	B	232	248	anti-parallel
Strand 5	B	64	71	anti-parallel

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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	159	first strand
Strand 2	B	78	81	anti-parallel
Strand 3	B	212	223	anti-parallel
Strand 4	B	119	128	anti-parallel
Strand 5	B	180	184	anti-parallel

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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	87	first strand
Strand 2	C	193	198	anti-parallel
Strand 3	C	130	136	anti-parallel
Strand 4	C	153	158	anti-parallel

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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	179	first strand
Strand 2	C	108	112	anti-parallel
Strand 3	C	225	229	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	28	first strand
Strand 2	D	43	44	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4C10

Analysis of interatomic Contacts of Structural Units in PDB entry:
4C10