Analysis of interatomic Contacts of Structural Units in PDB entry:
4C5C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4C5C entry

There are 2 chains in PDB entry 4C5C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 306
B
 MET 1ASP 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 4C5C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 33Right-handed alpha
Helix 2
2
A
46 50Right-handed 310
Helix 3
3
A
70 80Right-handed alpha
Helix 4
4
A
87 96Right-handed alpha
Helix 5
5
A
96 107Right-handed alpha
Helix 6
6
A
119 125Right-handed alpha
Helix 7
7
A
127 137Right-handed alpha
Helix 8
8
A
159 161Right-handed 310
Helix 9
9
A
162 172Right-handed alpha
Helix 10
10
A
211 217Right-handed alpha
Helix 11
11
A
230 249Right-handed alpha
Helix 12
12
A
281 290Right-handed alpha
Helix 13
13
A
293 304Right-handed alpha
Helix 14
14
B
15 33Right-handed alpha
Helix 15
15
B
46 50Right-handed 310
Helix 16
16
B
70 80Right-handed alpha
Helix 17
17
B
87 96Right-handed alpha
Helix 18
18
B
96 107Right-handed alpha
Helix 19
19
B
119 125Right-handed alpha
Helix 20
20
B
127 137Right-handed alpha
Helix 21
21
B
159 172Right-handed alpha
Helix 22
22
B
211 217Right-handed alpha
Helix 23
23
B
230 249Right-handed alpha
Helix 24
24
B
281 290Right-handed alpha
Helix 25
25
B
293 304Right-handed alpha
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There are 10 sheets in PDB entry 4C5C. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
A
4 8parallel
Strand 3
A
57 60parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 118first strand
Strand 2
A
176 181anti-parallel
Strand 3
A
141 145anti-parallel
Strand 4
A
155 157anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 197first strand
Strand 2
A
187 193anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 224first strand
Strand 2
A
201 204anti-parallel
Strand 3
A
187 193anti-parallel
Strand 4
A
196 197anti-parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 224first strand
Strand 2
A
201 204anti-parallel
Strand 3
A
187 193anti-parallel
Strand 4
A
253 260anti-parallel
Strand 5
A
266 272anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 40first strand
Strand 2
B
4 8parallel
Strand 3
B
57 60parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 118first strand
Strand 2
B
176 181anti-parallel
Strand 3
B
141 145anti-parallel
Strand 4
B
155 157anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 197first strand
Strand 2
B
187 193anti-parallel
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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 224first strand
Strand 2
B
201 204anti-parallel
Strand 3
B
187 193anti-parallel
Strand 4
B
196 197anti-parallel
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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 224first strand
Strand 2
B
201 204anti-parallel
Strand 3
B
187 193anti-parallel
Strand 4
B
253 260anti-parallel
Strand 5
B
266 272anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il