Analysis of interatomic Contacts of Structural Units in PDB entry:
4C5M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4C5M entry

There are 4 chains in PDB entry 4C5M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1VAL 276
B
 GLY 1VAL 276
C
 GLY 1VAL 276
D
 GLY 1VAL 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 4C5M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 30Right-handed alpha
Helix 2
2
A
57 72Right-handed alpha
Helix 3
3
A
83 97Right-handed alpha
Helix 4
4
A
118 129Right-handed alpha
Helix 5
5
A
130 133Right-handed 310
Helix 6
6
A
139 147Right-handed alpha
Helix 7
7
A
154 168Right-handed alpha
Helix 8
8
A
177 182Right-handed alpha
Helix 9
9
A
211 226Right-handed alpha
Helix 10
10
A
229 247Right-handed alpha
Helix 11
11
A
261 266Right-handed alpha
Helix 12
12
B
18 30Right-handed alpha
Helix 13
13
B
57 72Right-handed alpha
Helix 14
14
B
83 97Right-handed alpha
Helix 15
15
B
118 129Right-handed alpha
Helix 16
16
B
130 133Right-handed 310
Helix 17
17
B
139 147Right-handed alpha
Helix 18
18
B
154 168Right-handed alpha
Helix 19
19
B
178 181Right-handed 310
Helix 20
20
B
211 226Right-handed alpha
Helix 21
21
B
229 247Right-handed alpha
Helix 22
22
B
261 266Right-handed alpha
Helix 23
23
C
18 30Right-handed alpha
Helix 24
24
C
57 72Right-handed alpha
Helix 25
25
C
83 97Right-handed alpha
Helix 26
26
C
119 129Right-handed alpha
Helix 27
27
C
130 133Right-handed 310
Helix 28
28
C
139 148Right-handed alpha
Helix 29
29
C
154 168Right-handed alpha
Helix 30
30
C
178 181Right-handed 310
Helix 31
31
C
211 226Right-handed alpha
Helix 32
32
C
229 247Right-handed alpha
Helix 33
33
C
261 266Right-handed alpha
Helix 34
34
D
18 30Right-handed alpha
Helix 35
35
D
57 72Right-handed alpha
Helix 36
36
D
83 97Right-handed alpha
Helix 37
37
D
118 129Right-handed alpha
Helix 38
38
D
130 133Right-handed 310
Helix 39
39
D
139 148Right-handed alpha
Helix 40
40
D
154 168Right-handed alpha
Helix 41
41
D
177 182Right-handed alpha
Helix 42
42
D
211 226Right-handed alpha
Helix 43
43
D
229 247Right-handed alpha
Helix 44
44
D
261 266Right-handed alpha
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There are 10 sheets in PDB entry 4C5M. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, BC, CA, CB, A, DB, C,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 55first strand
Strand 2
A
33 44anti-parallel
Strand 3
A
5 13parallel
Strand 4
A
75 78parallel
Strand 5
A
101 104parallel
Strand 6
A
135 136parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 176first strand
Strand 2
A
185 191anti-parallel
Strand 3
A
196 202anti-parallel
Strand 4
A
272 275anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 55first strand
Strand 2
B
33 44anti-parallel
Strand 3
B
5 13parallel
Strand 4
B
75 78parallel
Strand 5
B
101 104parallel
Strand 6
B
135 136parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 112first strand
Strand 2
B
115 116anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 176first strand
Strand 2
B
185 191anti-parallel
Strand 3
B
196 202anti-parallel
Strand 4
B
272 275anti-parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 55first strand
Strand 2
C
33 44anti-parallel
Strand 3
C
5 13parallel
Strand 4
C
75 78parallel
Strand 5
C
101 104parallel
Strand 6
C
135 136parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
173 176first strand
Strand 2
C
185 191anti-parallel
Strand 3
C
196 202anti-parallel
Strand 4
C
272 275anti-parallel
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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 55first strand
Strand 2
D
33 44anti-parallel
Strand 3
D
5 13parallel
Strand 4
D
75 78parallel
Strand 5
D
101 104parallel
Strand 6
D
135 136parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
109 110first strand
Strand 2
D
116 117anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
173 176first strand
Strand 2
D
185 191anti-parallel
Strand 3
D
196 202anti-parallel
Strand 4
D
272 275anti-parallel
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