Analysis of interatomic Contacts of Structural Units in PDB entry:
4C90

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4C90 entry

There are 2 chains in PDB entry 4C90 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 33	GLU 854
B	GLU 32	ARG 853

There are 55 helices in PDB entry 4C90. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	62	80	Right-handed alpha
Helix 2	2	A	103	111	Right-handed alpha
Helix 3	3	A	116	120	Right-handed 310
Helix 4	4	A	149	164	Right-handed alpha
Helix 5	5	A	209	220	Right-handed alpha
Helix 6	6	A	225	239	Right-handed alpha
Helix 7	7	A	252	257	Right-handed alpha
Helix 8	8	A	258	268	Right-handed alpha
Helix 9	9	A	283	289	Right-handed alpha
Helix 10	10	A	297	317	Right-handed alpha
Helix 11	11	A	340	360	Right-handed alpha
Helix 12	12	A	362	366	Right-handed 310
Helix 13	13	A	375	382	Right-handed alpha
Helix 14	14	A	409	413	Right-handed 310
Helix 15	15	A	439	453	Right-handed alpha
Helix 16	16	A	469	482	Right-handed alpha
Helix 17	17	A	483	486	Right-handed 310
Helix 18	18	A	492	504	Right-handed alpha
Helix 19	19	A	507	525	Right-handed alpha
Helix 20	20	A	540	562	Right-handed alpha
Helix 21	21	A	564	566	Right-handed 310
Helix 22	22	A	567	575	Right-handed alpha
Helix 23	23	A	575	601	Right-handed alpha
Helix 24	24	A	605	630	Right-handed alpha
Helix 25	25	A	631	635	Right-handed 310
Helix 26	26	A	667	671	Right-handed 310
Helix 27	27	A	790	796	Right-handed alpha
Helix 28	28	B	62	81	Right-handed alpha
Helix 29	29	B	103	111	Right-handed alpha
Helix 30	30	B	112	114	Right-handed 310
Helix 31	31	B	149	163	Right-handed alpha
Helix 32	32	B	209	220	Right-handed alpha
Helix 33	33	B	225	239	Right-handed alpha
Helix 34	34	B	252	257	Right-handed alpha
Helix 35	35	B	258	268	Right-handed alpha
Helix 36	36	B	282	288	Right-handed alpha
Helix 37	37	B	289	294	Right-handed alpha
Helix 38	38	B	301	316	Right-handed alpha
Helix 39	39	B	340	360	Right-handed alpha
Helix 40	40	B	362	366	Right-handed 310
Helix 41	41	B	373	381	Right-handed alpha
Helix 42	42	B	407	412	Right-handed alpha
Helix 43	43	B	439	453	Right-handed alpha
Helix 44	44	B	469	482	Right-handed alpha
Helix 45	45	B	483	486	Right-handed 310
Helix 46	46	B	492	504	Right-handed alpha
Helix 47	47	B	507	525	Right-handed alpha
Helix 48	48	B	540	562	Right-handed alpha
Helix 49	49	B	564	566	Right-handed 310
Helix 50	50	B	567	575	Right-handed alpha
Helix 51	51	B	575	601	Right-handed alpha
Helix 52	52	B	605	630	Right-handed alpha
Helix 53	53	B	631	635	Right-handed 310
Helix 54	54	B	667	671	Right-handed 310
Helix 55	55	B	790	796	Right-handed alpha

There are 18 sheets in PDB entry 4C90. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, BA, BB, BC, BD, BE, BF, BG, BH, BI,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	36	first strand
Strand 2	A	183	185	anti-parallel
Strand 3	A	44	47	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	94	100	parallel
Strand 3	A	141	147	parallel
Strand 4	A	127	133	anti-parallel

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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	271	first strand
Strand 2	A	243	245	parallel
Strand 3	A	199	203	parallel
Strand 4	A	458	462	parallel
Strand 5	A	417	422	parallel
Strand 6	A	391	395	parallel
Strand 7	A	368	371	parallel
Strand 8	A	323	324	parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	693	695	first strand
Strand 2	A	728	734	anti-parallel

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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	772	775	first strand
Strand 2	A	761	766	anti-parallel
Strand 3	A	815	822	anti-parallel
Strand 4	A	728	734	anti-parallel
Strand 5	A	693	695	anti-parallel

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There are 6 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	772	775	first strand
Strand 2	A	761	766	anti-parallel
Strand 3	A	815	822	anti-parallel
Strand 4	A	728	734	anti-parallel
Strand 5	A	675	678	parallel
Strand 6	A	850	853	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	683	687	first strand
Strand 2	A	828	835	parallel

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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	706	first strand
Strand 2	A	713	718	anti-parallel
Strand 3	A	828	835	anti-parallel
Strand 4	A	741	749	anti-parallel
Strand 5	A	799	807	anti-parallel

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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	706	first strand
Strand 2	A	713	718	anti-parallel
Strand 3	A	828	835	anti-parallel
Strand 4	A	683	687	parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	36	first strand
Strand 2	B	183	185	anti-parallel
Strand 3	B	44	48	anti-parallel
Strand 4	B	51	52	anti-parallel

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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	87	first strand
Strand 2	B	55	57	parallel
Strand 3	B	94	100	parallel
Strand 4	B	141	147	parallel
Strand 5	B	127	132	anti-parallel
Strand 6	B	189	190	anti-parallel

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There are 8 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	271	first strand
Strand 2	B	243	245	parallel
Strand 3	B	199	203	parallel
Strand 4	B	458	462	parallel
Strand 5	B	417	422	parallel
Strand 6	B	391	395	parallel
Strand 7	B	368	371	parallel
Strand 8	B	323	324	parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	693	695	first strand
Strand 2	B	728	734	anti-parallel

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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	772	775	first strand
Strand 2	B	761	766	anti-parallel
Strand 3	B	815	822	anti-parallel
Strand 4	B	728	734	anti-parallel
Strand 5	B	693	695	anti-parallel

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There are 6 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	772	775	first strand
Strand 2	B	761	766	anti-parallel
Strand 3	B	815	822	anti-parallel
Strand 4	B	728	734	anti-parallel
Strand 5	B	676	678	parallel
Strand 6	B	850	852	anti-parallel

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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	683	687	first strand
Strand 2	B	828	835	parallel

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There are 5 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	701	706	first strand
Strand 2	B	713	718	anti-parallel
Strand 3	B	828	835	anti-parallel
Strand 4	B	741	749	anti-parallel
Strand 5	B	799	807	anti-parallel

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There are 4 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	701	706	first strand
Strand 2	B	713	718	anti-parallel
Strand 3	B	828	835	anti-parallel
Strand 4	B	683	687	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4C90

Analysis of interatomic Contacts of Structural Units in PDB entry:
4C90