Analysis of interatomic Contacts of Structural Units in PDB entry:
4C92


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4C92 entry

There are 7 chains in PDB entry 4C92 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 43TYR 172
B
 SER -9LYS 95
C
 MET 1PRO 79
D
 MET 1ASN 84
E
 PRO 4LYS 87
F
 SER 10ILE 86
G
 ALA 26VAL 110
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 4C92. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
2
A
117 125Right-handed alpha
Helix 2
3
A
132 160Right-handed alpha
Helix 3
4
B
2 10Right-handed alpha
Helix 4
6
B
74 76Right-handed 310
Helix 5
7
B
79 93Right-handed alpha
Helix 6
8
C
4 11Right-handed alpha
Helix 7
10
D
2 9Right-handed alpha
Helix 8
11
D
48 53Right-handed alpha
Helix 9
13
E
8 15Right-handed alpha
Helix 10
14
F
11 19Right-handed alpha
Helix 11
16
G
30 33Right-handed 310
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There are 13 sheets in PDB entry 4C92. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 104first strand
Strand 2
A
82 88anti-parallel
Strand 3
A
63 68anti-parallel
Strand 4
A
52 58anti-parallel
Strand 5
A
109 114anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
67 71anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 71first strand
Strand 2
B
14 19anti-parallel
Strand 3
B
24 32anti-parallel
Strand 4
B
38 45anti-parallel
Strand 5
B
59 62anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 63first strand
Strand 2
C
44 52anti-parallel
Strand 3
C
24 29anti-parallel
Strand 4
C
15 20anti-parallel
Strand 5
C
73 78anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
65 68first strand
Strand 2
C
39 42anti-parallel
Strand 3
C
29 33anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
64 66first strand
Strand 2
D
43 47anti-parallel
Strand 3
D
23 28anti-parallel
Strand 4
D
14 19anti-parallel
Strand 5
D
76 81anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
68 71first strand
Strand 2
D
38 41anti-parallel
Strand 3
D
28 32anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
62 66first strand
Strand 2
E
49 52anti-parallel
Strand 3
E
28 33anti-parallel
Strand 4
E
19 24anti-parallel
Strand 5
E
78 83anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
70 73first strand
Strand 2
E
43 46anti-parallel
Strand 3
E
33 37anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
53 56first strand
Strand 2
F
32 37anti-parallel
Strand 3
F
23 28anti-parallel
Strand 4
F
78 83anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
71 73first strand
Strand 2
F
47 50anti-parallel
Strand 3
F
37 41anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
86 94first strand
Strand 2
G
66 69anti-parallel
Strand 3
G
47 51anti-parallel
Strand 4
G
37 42anti-parallel
Strand 5
G
99 104anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
61 64first strand
Strand 2
G
51 55anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il