Analysis of interatomic Contacts of Structural Units in PDB entry:
4CBM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4CBM entry

There are 4 chains in PDB entry 4CBM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 203	LEU 690
B	ASP 205	ASN 688
C	ASP 205	GLY 682
D	ASP 205	GLY 682

There are 80 helices in PDB entry 4CBM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	205	216	Right-handed alpha
Helix 2	2	A	234	245	Right-handed alpha
Helix 3	3	A	256	271	Right-handed alpha
Helix 4	4	A	298	303	Right-handed 310
Helix 5	5	A	304	313	Right-handed alpha
Helix 6	6	A	323	326	Right-handed 310
Helix 7	7	A	327	339	Right-handed alpha
Helix 8	8	A	340	344	Right-handed 310
Helix 9	9	A	407	421	Right-handed alpha
Helix 10	10	A	435	443	Right-handed alpha
Helix 11	11	A	452	455	Right-handed 310
Helix 12	12	A	498	505	Right-handed alpha
Helix 13	13	A	528	536	Right-handed alpha
Helix 14	14	A	537	540	Right-handed 310
Helix 15	15	A	545	558	Right-handed alpha
Helix 16	16	A	563	578	Right-handed alpha
Helix 17	17	A	583	593	Right-handed alpha
Helix 18	18	A	598	605	Right-handed alpha
Helix 19	19	A	649	658	Right-handed alpha
Helix 20	20	A	667	690	Right-handed alpha
Helix 21	21	B	205	216	Right-handed alpha
Helix 22	22	B	234	245	Right-handed alpha
Helix 23	23	B	256	271	Right-handed alpha
Helix 24	24	B	298	303	Right-handed 310
Helix 25	25	B	304	313	Right-handed alpha
Helix 26	26	B	323	326	Right-handed 310
Helix 27	27	B	327	339	Right-handed alpha
Helix 28	28	B	340	344	Right-handed 310
Helix 29	29	B	407	421	Right-handed alpha
Helix 30	30	B	435	443	Right-handed alpha
Helix 31	31	B	452	455	Right-handed 310
Helix 32	32	B	498	505	Right-handed alpha
Helix 33	33	B	528	536	Right-handed alpha
Helix 34	34	B	537	540	Right-handed 310
Helix 35	35	B	545	558	Right-handed alpha
Helix 36	36	B	563	578	Right-handed alpha
Helix 37	37	B	583	593	Right-handed alpha
Helix 38	38	B	598	605	Right-handed alpha
Helix 39	39	B	649	658	Right-handed alpha
Helix 40	40	B	667	688	Right-handed alpha
Helix 41	41	C	205	216	Right-handed alpha
Helix 42	42	C	234	245	Right-handed alpha
Helix 43	43	C	256	271	Right-handed alpha
Helix 44	44	C	298	303	Right-handed 310
Helix 45	45	C	304	313	Right-handed alpha
Helix 46	46	C	323	326	Right-handed 310
Helix 47	47	C	327	339	Right-handed alpha
Helix 48	48	C	340	344	Right-handed 310
Helix 49	49	C	395	399	Right-handed 310
Helix 50	50	C	407	421	Right-handed alpha
Helix 51	51	C	433	443	Right-handed alpha
Helix 52	52	C	496	505	Right-handed alpha
Helix 53	53	C	528	536	Right-handed alpha
Helix 54	54	C	537	540	Right-handed 310
Helix 55	55	C	545	558	Right-handed alpha
Helix 56	56	C	563	578	Right-handed alpha
Helix 57	57	C	583	593	Right-handed alpha
Helix 58	58	C	598	605	Right-handed alpha
Helix 59	59	C	649	658	Right-handed alpha
Helix 60	60	C	667	682	Right-handed alpha
Helix 61	61	D	205	216	Right-handed alpha
Helix 62	62	D	234	245	Right-handed alpha
Helix 63	63	D	256	271	Right-handed alpha
Helix 64	64	D	298	303	Right-handed 310
Helix 65	65	D	304	313	Right-handed alpha
Helix 66	66	D	323	326	Right-handed 310
Helix 67	67	D	327	339	Right-handed alpha
Helix 68	68	D	340	344	Right-handed 310
Helix 69	69	D	395	399	Right-handed 310
Helix 70	70	D	407	421	Right-handed alpha
Helix 71	71	D	451	455	Right-handed 310
Helix 72	72	D	496	505	Right-handed alpha
Helix 73	73	D	528	536	Right-handed alpha
Helix 74	74	D	537	540	Right-handed 310
Helix 75	75	D	545	558	Right-handed alpha
Helix 76	76	D	563	578	Right-handed alpha
Helix 77	77	D	583	593	Right-handed alpha
Helix 78	78	D	598	605	Right-handed alpha
Helix 79	79	D	649	658	Right-handed alpha
Helix 80	80	D	667	682	Right-handed alpha

There are 22 sheets in PDB entry 4CBM. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF, CA, CB, CC, CD, CE, A, DB, C, DD, DE,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	225	first strand
Strand 2	A	346	350	parallel
Strand 3	A	317	321	parallel
Strand 4	A	250	254	parallel
Strand 5	A	292	296	parallel
Strand 6	A	276	279	parallel

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There are 12 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	428	first strand
Strand 2	A	447	450	parallel
Strand 3	A	401	404	parallel
Strand 4	A	465	468	parallel
Strand 5	A	513	517	parallel
Strand 6	A	366	370	parallel
Strand 7	C	366	370	anti-parallel
Strand 8	C	513	517	parallel
Strand 9	C	465	468	parallel
Strand 10	C	401	404	parallel
Strand 11	C	447	450	parallel
Strand 12	C	425	428	parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	384	387	first strand
Strand 2	A	390	393	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	471	479	first strand
Strand 2	A	486	494	anti-parallel
Strand 3	A	646	648	parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	612	613	first strand
Strand 2	A	635	636	parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	615	618	first strand
Strand 2	A	621	626	anti-parallel

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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	225	first strand
Strand 2	B	346	350	parallel
Strand 3	B	317	321	parallel
Strand 4	B	250	254	parallel
Strand 5	B	292	296	parallel
Strand 6	B	276	279	parallel

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There are 11 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	425	428	first strand
Strand 2	B	447	450	parallel
Strand 3	B	401	404	parallel
Strand 4	B	465	468	parallel
Strand 5	B	513	517	parallel
Strand 6	B	366	370	parallel
Strand 7	D	366	370	anti-parallel
Strand 8	D	513	517	parallel
Strand 9	D	465	468	parallel
Strand 10	D	401	404	parallel
Strand 11	D	447	450	parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	384	387	first strand
Strand 2	B	390	393	anti-parallel

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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	471	479	first strand
Strand 2	B	486	494	anti-parallel
Strand 3	B	646	648	parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	612	613	first strand
Strand 2	B	635	636	parallel

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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	615	618	first strand
Strand 2	B	621	626	anti-parallel

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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	225	first strand
Strand 2	C	346	350	parallel
Strand 3	C	317	321	parallel
Strand 4	C	250	254	parallel
Strand 5	C	292	296	parallel
Strand 6	C	276	279	parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	384	387	first strand
Strand 2	C	390	393	anti-parallel

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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	471	479	first strand
Strand 2	C	486	494	anti-parallel
Strand 3	C	646	648	parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	612	613	first strand
Strand 2	C	635	636	parallel

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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	617	618	first strand
Strand 2	C	621	622	anti-parallel

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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	221	225	first strand
Strand 2	D	346	350	parallel
Strand 3	D	317	321	parallel
Strand 4	D	250	254	parallel
Strand 5	D	292	296	parallel
Strand 6	D	276	279	parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	384	387	first strand
Strand 2	D	390	393	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	471	479	first strand
Strand 2	D	486	494	anti-parallel
Strand 3	D	646	648	parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	612	613	first strand
Strand 2	D	635	636	parallel

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There are 2 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	617	618	first strand
Strand 2	D	621	622	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4CBM

Analysis of interatomic Contacts of Structural Units in PDB entry:
4CBM