Analysis of interatomic Contacts of Structural Units in PDB entry:
4CBW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4CBW entry

There are 2 chains in PDB entry 4CBW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5PHE 376
G
 VAL 27PHE 149
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 4CBW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
56 61Right-handed alpha
Helix 2
2
A
62 64Right-handed 310
Helix 3
3
A
79 93Right-handed alpha
Helix 4
4
A
98 102Right-handed 310
Helix 5
5
A
113 127Right-handed alpha
Helix 6
6
A
138 146Right-handed alpha
Helix 7
7
A
173 176Right-handed 310
Helix 8
8
A
182 194Right-handed alpha
Helix 9
9
A
195 198Right-handed 310
Helix 10
10
A
205 218Right-handed alpha
Helix 11
11
A
223 234Right-handed alpha
Helix 12
12
A
253 258Right-handed alpha
Helix 13
13
A
259 263Right-handed 310
Helix 14
14
A
264 269Right-handed 310
Helix 15
15
A
274 285Right-handed alpha
Helix 16
16
A
287 289Right-handed 310
Helix 17
17
A
290 296Right-handed alpha
Helix 18
18
A
302 307Right-handed 310
Helix 19
19
A
309 322Right-handed alpha
Helix 20
20
A
338 348Right-handed alpha
Helix 21
21
A
352 356Right-handed 310
Helix 22
22
A
360 367Right-handed alpha
Helix 23
23
A
370 375Right-handed alpha
Helix 24
24
G
29 35Right-handed alpha
Helix 25
25
G
55 59Right-handed 310
Helix 26
26
G
94 112Right-handed alpha
Helix 27
27
G
127 132Right-handed alpha
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There are 10 sheets in PDB entry 4CBW. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, GA, GB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
17 22anti-parallel
Strand 3
A
9 12anti-parallel
Strand 4
A
104 108parallel
Strand 5
A
132 137parallel
Strand 6
A
358 359anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
36 39anti-parallel
Strand 3
A
66 69anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 73first strand
Strand 2
A
76 77anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
161 167parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 179first strand
Strand 2
A
161 167anti-parallel
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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 331first strand
Strand 2
A
298 301parallel
Strand 3
A
151 156parallel
Strand 4
A
161 167anti-parallel
Strand 5
A
170 171parallel
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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 331first strand
Strand 2
A
298 301parallel
Strand 3
A
151 156parallel
Strand 4
A
161 167anti-parallel
Strand 5
A
177 179anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 242first strand
Strand 2
A
248 251anti-parallel
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There are 5 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
51 53first strand
Strand 2
G
40 46anti-parallel
Strand 3
G
67 75anti-parallel
Strand 4
G
81 89anti-parallel
Strand 5
G
116 122parallel
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There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
61 63first strand
Strand 2
G
139 141parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il