Analysis of interatomic Contacts of Structural Units in PDB entry:
4CBY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4CBY entry

There are 4 chains in PDB entry 4CBY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 653GLN 1032
B
 PHE 652LEU 1031
C
 THR 653GLN 1032
D
 THR 653HIS 1035
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 81 helices in PDB entry 4CBY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
659 665Right-handed 310
Helix 2
2
A
671 675Right-handed 310
Helix 3
3
A
679 692Right-handed alpha
Helix 4
4
A
694 698Right-handed 310
Helix 5
5
A
707 712Right-handed alpha
Helix 6
6
A
716 725Right-handed alpha
Helix 7
7
A
726 733Right-handed alpha
Helix 8
8
A
741 745Right-handed 310
Helix 9
9
A
766 787Right-handed alpha
Helix 10
10
A
816 830Right-handed alpha
Helix 11
11
A
844 852Right-handed alpha
Helix 12
12
A
866 869Right-handed 310
Helix 13
13
A
882 886Right-handed 310
Helix 14
14
A
903 914Right-handed alpha
Helix 15
15
A
914 923Right-handed alpha
Helix 16
16
A
949 962Right-handed alpha
Helix 17
17
A
963 966Right-handed 310
Helix 18
18
A
977 994Right-handed alpha
Helix 19
19
A
1001 1006Right-handed alpha
Helix 20
20
A
1010 1026Right-handed alpha
Helix 21
21
A
1028 1032Right-handed 310
Helix 22
22
B
659 665Right-handed 310
Helix 23
23
B
671 675Right-handed 310
Helix 24
24
B
679 692Right-handed alpha
Helix 25
25
B
694 698Right-handed 310
Helix 26
26
B
707 712Right-handed alpha
Helix 27
27
B
716 725Right-handed alpha
Helix 28
28
B
726 733Right-handed alpha
Helix 29
29
B
741 745Right-handed 310
Helix 30
30
B
766 787Right-handed alpha
Helix 31
31
B
816 830Right-handed alpha
Helix 32
32
B
844 852Right-handed alpha
Helix 33
33
B
866 869Right-handed 310
Helix 34
34
B
882 886Right-handed 310
Helix 35
35
B
903 914Right-handed alpha
Helix 36
36
B
914 923Right-handed alpha
Helix 37
37
B
949 962Right-handed alpha
Helix 38
38
B
963 966Right-handed 310
Helix 39
39
B
977 994Right-handed alpha
Helix 40
40
B
1001 1006Right-handed alpha
Helix 41
41
B
1010 1026Right-handed alpha
Helix 42
42
C
659 665Right-handed 310
Helix 43
43
C
671 675Right-handed 310
Helix 44
44
C
679 692Right-handed alpha
Helix 45
45
C
694 698Right-handed 310
Helix 46
46
C
707 712Right-handed alpha
Helix 47
47
C
716 725Right-handed alpha
Helix 48
48
C
726 733Right-handed alpha
Helix 49
49
C
766 787Right-handed alpha
Helix 50
50
C
816 830Right-handed alpha
Helix 51
51
C
844 852Right-handed alpha
Helix 52
52
C
866 869Right-handed 310
Helix 53
53
C
882 886Right-handed 310
Helix 54
54
C
903 914Right-handed alpha
Helix 55
55
C
914 923Right-handed alpha
Helix 56
56
C
949 962Right-handed alpha
Helix 57
57
C
963 966Right-handed 310
Helix 58
58
C
977 994Right-handed alpha
Helix 59
59
C
1001 1006Right-handed alpha
Helix 60
60
C
1010 1025Right-handed alpha
Helix 61
61
C
1028 1032Right-handed 310
Helix 62
62
D
659 665Right-handed 310
Helix 63
63
D
671 675Right-handed 310
Helix 64
64
D
679 692Right-handed alpha
Helix 65
65
D
694 698Right-handed 310
Helix 66
66
D
707 712Right-handed alpha
Helix 67
67
D
716 725Right-handed alpha
Helix 68
68
D
726 733Right-handed alpha
Helix 69
69
D
766 787Right-handed alpha
Helix 70
70
D
816 830Right-handed alpha
Helix 71
71
D
844 852Right-handed alpha
Helix 72
72
D
866 869Right-handed 310
Helix 73
73
D
882 886Right-handed 310
Helix 74
74
D
903 914Right-handed alpha
Helix 75
75
D
914 923Right-handed alpha
Helix 76
76
D
949 962Right-handed alpha
Helix 77
77
D
963 966Right-handed 310
Helix 78
78
D
977 994Right-handed alpha
Helix 79
79
D
1001 1006Right-handed alpha
Helix 80
80
D
1010 1026Right-handed alpha
Helix 81
81
D
1028 1032Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 4CBY. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
699 701first strand
Strand 2
A
654 657parallel
Strand 3
A
792 795parallel
Strand 4
A
968 972parallel
Strand 5
A
926 931parallel
Strand 6
A
834 838parallel
Strand 7
A
857 864parallel
Strand 8
A
889 894parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
747 748first strand
Strand 2
A
754 755anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
699 701first strand
Strand 2
B
654 657parallel
Strand 3
B
792 795parallel
Strand 4
B
968 972parallel
Strand 5
B
926 931parallel
Strand 6
B
834 838parallel
Strand 7
B
857 864parallel
Strand 8
B
889 894parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
747 748first strand
Strand 2
B
754 755anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
699 701first strand
Strand 2
C
654 657parallel
Strand 3
C
792 795parallel
Strand 4
C
968 972parallel
Strand 5
C
926 931parallel
Strand 6
C
834 838parallel
Strand 7
C
857 864parallel
Strand 8
C
889 894parallel
Back to list of sheets
Back to top of page

There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
747 748first strand
Strand 2
C
754 755anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
699 701first strand
Strand 2
D
654 657parallel
Strand 3
D
792 795parallel
Strand 4
D
968 972parallel
Strand 5
D
926 931parallel
Strand 6
D
834 838parallel
Strand 7
D
857 864parallel
Strand 8
D
889 894parallel
Back to list of sheets
Back to top of page

There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
747 748first strand
Strand 2
D
754 755anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il