Analysis of interatomic Contacts of Structural Units in PDB entry:
4CDG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4CDG entry

There are 4 chains in PDB entry 4CDG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 639SER 1290
B
 HIS 641SER 1290
C
 GLN 23HIS 144
D
 GLN 23HIS 144
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 4CDG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
641 645Right-handed 310
Helix 2
2
A
651 662Right-handed alpha
Helix 3
3
A
671 680Right-handed alpha
Helix 4
4
A
696 705Right-handed alpha
Helix 5
5
A
716 729Right-handed alpha
Helix 6
6
A
742 755Right-handed alpha
Helix 7
7
A
766 773Right-handed alpha
Helix 8
8
A
773 786Right-handed alpha
Helix 9
9
A
796 801Right-handed 310
Helix 10
10
A
808 813Right-handed 310
Helix 11
11
A
814 821Right-handed alpha
Helix 12
12
A
834 846Right-handed alpha
Helix 13
13
A
873 886Right-handed alpha
Helix 14
14
A
897 910Right-handed alpha
Helix 15
15
A
923 936Right-handed alpha
Helix 16
16
A
947 951Right-handed alpha
Helix 17
17
A
969 979Right-handed alpha
Helix 18
18
A
995 1003Right-handed alpha
Helix 19
19
A
1015 1032Right-handed alpha
Helix 20
20
A
1036 1044Right-handed alpha
Helix 21
21
A
1053 1058Right-handed alpha
Helix 22
22
A
1059 1062Right-handed 310
Helix 23
23
A
1063 1069Right-handed alpha
Helix 24
24
A
1077 1091Right-handed alpha
Helix 25
25
A
1110 1120Right-handed alpha
Helix 26
26
A
1138 1152Right-handed alpha
Helix 27
27
A
1177 1182Right-handed alpha
Helix 28
28
A
1194 1198Right-handed 310
Helix 29
29
A
1209 1234Right-handed alpha
Helix 30
30
A
1236 1240Right-handed 310
Helix 31
31
A
1242 1253Right-handed alpha
Helix 32
32
A
1256 1261Right-handed alpha
Helix 33
33
A
1269 1274Right-handed alpha
Helix 34
34
A
1274 1284Right-handed alpha
Helix 35
35
A
1285 1289Right-handed 310
Helix 36
36
B
641 646Right-handed 310
Helix 37
37
B
651 662Right-handed alpha
Helix 38
38
B
671 680Right-handed alpha
Helix 39
39
B
696 705Right-handed alpha
Helix 40
40
B
716 729Right-handed alpha
Helix 41
41
B
742 755Right-handed alpha
Helix 42
42
B
766 773Right-handed alpha
Helix 43
43
B
773 786Right-handed alpha
Helix 44
44
B
796 801Right-handed 310
Helix 45
45
B
808 814Right-handed 310
Helix 46
46
B
815 821Right-handed alpha
Helix 47
47
B
834 845Right-handed alpha
Helix 48
48
B
873 886Right-handed alpha
Helix 49
49
B
897 911Right-handed alpha
Helix 50
50
B
923 936Right-handed alpha
Helix 51
51
B
947 951Right-handed alpha
Helix 52
52
B
969 979Right-handed alpha
Helix 53
53
B
995 1003Right-handed alpha
Helix 54
54
B
1017 1032Right-handed alpha
Helix 55
55
B
1036 1044Right-handed alpha
Helix 56
56
B
1053 1058Right-handed alpha
Helix 57
57
B
1059 1062Right-handed 310
Helix 58
58
B
1063 1068Right-handed alpha
Helix 59
59
B
1077 1091Right-handed alpha
Helix 60
60
B
1110 1120Right-handed alpha
Helix 61
61
B
1138 1152Right-handed alpha
Helix 62
62
B
1177 1182Right-handed alpha
Helix 63
63
B
1194 1198Right-handed 310
Helix 64
64
B
1209 1234Right-handed alpha
Helix 65
65
B
1236 1240Right-handed 310
Helix 66
66
B
1242 1253Right-handed alpha
Helix 67
67
B
1256 1261Right-handed alpha
Helix 68
68
B
1267 1274Right-handed alpha
Helix 69
69
B
1274 1284Right-handed alpha
Helix 70
70
B
1285 1289Right-handed 310
Helix 71
71
C
83 86Right-handed 310
Helix 72
72
C
95 97Right-handed 310
Helix 73
73
C
108 112Right-handed 310
Helix 74
74
D
83 86Right-handed 310
Helix 75
75
D
108 112Right-handed 310
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There are 16 sheets in PDB entry 4CDG. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, DD,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
734 737first strand
Strand 2
A
762 765parallel
Strand 3
A
709 713parallel
Strand 4
A
789 794parallel
Strand 5
A
826 830parallel
Strand 6
A
685 688parallel
Strand 7
A
851 853parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
862 868first strand
Strand 2
A
987 993parallel
Strand 3
A
960 963parallel
Strand 4
A
891 895parallel
Strand 5
A
942 946parallel
Strand 6
A
915 918parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1074 1076first strand
Strand 2
A
1188 1190anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1155 1161first strand
Strand 2
A
1167 1173anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
734 737first strand
Strand 2
B
762 765parallel
Strand 3
B
709 713parallel
Strand 4
B
789 794parallel
Strand 5
B
826 830parallel
Strand 6
B
685 688parallel
Strand 7
B
851 853parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
862 868first strand
Strand 2
B
987 993parallel
Strand 3
B
960 963parallel
Strand 4
B
891 895parallel
Strand 5
B
942 946parallel
Strand 6
B
915 918parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1074 1076first strand
Strand 2
B
1188 1190anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1155 1161first strand
Strand 2
B
1167 1173anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 29first strand
Strand 2
C
40 47anti-parallel
Strand 3
C
99 104anti-parallel
Strand 4
C
89 94anti-parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 35first strand
Strand 2
C
135 140parallel
Strand 3
C
113 120anti-parallel
Strand 4
C
129 131anti-parallel
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There are 6 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 35first strand
Strand 2
C
135 140parallel
Strand 3
C
113 120anti-parallel
Strand 4
C
55 61anti-parallel
Strand 5
C
68 74anti-parallel
Strand 6
C
79 81anti-parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
129 131first strand
Strand 2
C
113 120anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
25 29first strand
Strand 2
D
40 47anti-parallel
Strand 3
D
99 104anti-parallel
Strand 4
D
89 94anti-parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 35first strand
Strand 2
D
135 140parallel
Strand 3
D
113 120anti-parallel
Strand 4
D
129 131anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 35first strand
Strand 2
D
135 140parallel
Strand 3
D
113 120anti-parallel
Strand 4
D
55 61anti-parallel
Strand 5
D
68 74anti-parallel
Strand 6
D
79 81anti-parallel
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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
129 131first strand
Strand 2
D
113 120anti-parallel
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