Analysis of interatomic Contacts of Structural Units in PDB entry:
4CDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4CDJ entry

There are 2 chains in PDB entry 4CDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 56LEU 208
B
 GLY 54HIS 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 4CDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
102 107Right-handed 310
Helix 2
2
A
128 132Right-handed 310
Helix 3
3
A
138 149Right-handed alpha
Helix 4
4
A
163 169Right-handed alpha
Helix 5
5
A
184 196Right-handed alpha
Helix 6
6
B
102 107Right-handed 310
Helix 7
7
B
128 132Right-handed 310
Helix 8
8
B
138 149Right-handed alpha
Helix 9
9
B
163 169Right-handed alpha
Helix 10
10
B
184 196Right-handed alpha
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There are 2 sheets in PDB entry 4CDJ. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 67first strand
Strand 2
A
75 85anti-parallel
Strand 3
A
180 183anti-parallel
Strand 4
A
151 157parallel
Strand 5
A
120 125parallel
Strand 6
A
94 100parallel
Strand 7
A
201 207anti-parallel
Strand 8
A
58 67anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 68first strand
Strand 2
B
74 85anti-parallel
Strand 3
B
180 183anti-parallel
Strand 4
B
151 157parallel
Strand 5
B
120 125parallel
Strand 6
B
94 100parallel
Strand 7
B
201 206anti-parallel
Strand 8
B
58 68anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il