Analysis of interatomic Contacts of Structural Units in PDB entry:
4CDK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4CDK entry

There are 8 chains in PDB entry 4CDK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 57LEU 208
B
 GLY 54ALA 211
C
 GLU 57ALA 211
D
 LYS 56ALA 209
E
 GLY 36PRO 145
F
 CYS 40CYS 142
G
 ALA 39PRO 145
H
 ALA 39SER 143
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 4CDK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
102 107Right-handed 310
Helix 2
2
A
110 114Right-handed 310
Helix 3
3
A
138 149Right-handed alpha
Helix 4
4
A
162 170Right-handed alpha
Helix 5
5
A
184 198Right-handed alpha
Helix 6
6
B
102 107Right-handed 310
Helix 7
7
B
138 149Right-handed alpha
Helix 8
8
B
162 169Right-handed alpha
Helix 9
9
B
170 172Right-handed 310
Helix 10
10
B
184 198Right-handed alpha
Helix 11
11
C
102 107Right-handed 310
Helix 12
12
C
138 149Right-handed alpha
Helix 13
13
C
162 170Right-handed alpha
Helix 14
14
C
184 198Right-handed alpha
Helix 15
15
D
102 107Right-handed 310
Helix 16
16
D
128 132Right-handed 310
Helix 17
17
D
138 149Right-handed alpha
Helix 18
18
D
162 169Right-handed alpha
Helix 19
19
D
184 198Right-handed alpha
Back to top of page

There are 21 sheets in PDB entry 4CDK. Click on sheet of interest to get list of strands forming it: AA, BA, A, EA, EB, EC, ED, EE, FA, FB, FC, FD, FE, GA, GB, GC, GD, HA, HB, HC, HD,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 68first strand
Strand 2
A
74 85anti-parallel
Strand 3
A
180 183anti-parallel
Strand 4
A
151 157parallel
Strand 5
A
120 125parallel
Strand 6
A
94 100parallel
Strand 7
A
202 206anti-parallel
Strand 8
A
58 68anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 68first strand
Strand 2
B
74 85anti-parallel
Strand 3
B
180 183anti-parallel
Strand 4
B
151 157parallel
Strand 5
B
120 125parallel
Strand 6
B
94 100parallel
Strand 7
B
202 207anti-parallel
Strand 8
B
59 68anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 68first strand
Strand 2
D
74 85anti-parallel
Strand 3
D
180 183anti-parallel
Strand 4
D
151 157parallel
Strand 5
D
120 125parallel
Strand 6
D
94 100parallel
Strand 7
D
202 207anti-parallel
Strand 8
D
58 68anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
44 48first strand
Strand 2
E
52 56anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
61 67first strand
Strand 2
E
70 76anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
83 87first strand
Strand 2
E
92 96anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
102 104first strand
Strand 2
E
113 114anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in EE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
119 121first strand
Strand 2
E
124 126anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
44 48first strand
Strand 2
F
52 56anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
61 67first strand
Strand 2
F
70 76anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
83 84first strand
Strand 2
F
95 96anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in FD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
102 104first strand
Strand 2
F
113 114anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in FE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
119 121first strand
Strand 2
F
124 126anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
44 48first strand
Strand 2
G
52 56anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in GB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
70 76first strand
Strand 2
G
61 67anti-parallel
Strand 3
G
93 96parallel
Strand 4
G
83 86anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in GC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
102 104first strand
Strand 2
G
113 114anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in GD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
119 121first strand
Strand 2
G
124 126anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
44 48first strand
Strand 2
H
52 56anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in HB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
70 76first strand
Strand 2
H
61 67anti-parallel
Strand 3
H
92 93parallel
Back to list of sheets
Back to top of page

There are 2 strands in HC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
83 84first strand
Strand 2
H
95 96anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in HD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
119 121first strand
Strand 2
H
124 126anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il