Analysis of interatomic Contacts of Structural Units in PDB entry:
4CDM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4CDM entry

There is 1 chain in PDB entry 4CDM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1SER 462
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 4CDM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 6Right-handed 310
Helix 2
2
A
34 47Right-handed alpha
Helix 3
3
A
65 85Right-handed alpha
Helix 4
4
A
96 108Right-handed alpha
Helix 5
5
A
120 133Right-handed alpha
Helix 6
6
A
148 153Right-handed alpha
Helix 7
7
A
159 169Right-handed alpha
Helix 8
8
A
170 175Right-handed alpha
Helix 9
9
A
199 212Right-handed alpha
Helix 10
10
A
226 230Right-handed 310
Helix 11
11
A
233 248Right-handed alpha
Helix 12
12
A
248 256Right-handed alpha
Helix 13
13
A
267 273Right-handed alpha
Helix 14
14
A
277 288Right-handed alpha
Helix 15
15
A
293 303Right-handed alpha
Helix 16
16
A
303 316Right-handed alpha
Helix 17
17
A
321 325Right-handed 310
Helix 18
18
A
326 336Right-handed alpha
Helix 19
19
A
346 352Right-handed alpha
Helix 20
20
A
357 371Right-handed alpha
Helix 21
21
A
374 388Right-handed alpha
Helix 22
22
A
391 407Right-handed alpha
Helix 23
23
A
412 425Right-handed alpha
Helix 24
24
A
444 452Right-handed alpha
Helix 25
25
A
453 461Right-handed alpha
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There are 2 sheets in PDB entry 4CDM. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
138 141anti-parallel
Strand 3
A
113 116parallel
Strand 4
A
21 24parallel
Strand 5
A
51 57parallel
Strand 6
A
90 94parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 218first strand
Strand 2
A
222 223anti-parallel
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