Analysis of interatomic Contacts of Structural Units in PDB entry:
4CDP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4CDP entry

There is 1 chain in PDB entry 4CDP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1PRO 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 4CDP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-1 14Right-handed alpha
Helix 2
2
A
18 26Right-handed alpha
Helix 3
3
A
29 38Right-handed alpha
Helix 4
4
A
48 57Right-handed alpha
Helix 5
5
A
58 60Right-handed 310
Helix 6
6
A
144 156Right-handed alpha
Helix 7
7
A
178 189Right-handed alpha
Helix 8
8
A
191 193Right-handed 310
Helix 9
9
A
194 202Right-handed alpha
Helix 10
10
A
205 213Right-handed alpha
Helix 11
11
A
224 237Right-handed alpha
Helix 12
12
A
280 283Right-handed 310
Helix 13
13
A
325 334Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 4CDP. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
106 114anti-parallel
Strand 3
A
121 128anti-parallel
Strand 4
A
133 139anti-parallel
Strand 5
A
62 67anti-parallel
Strand 6
A
71 77anti-parallel
Strand 7
A
274 278anti-parallel
Strand 8
A
266 270anti-parallel
Strand 9
A
260 263anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
89 91anti-parallel
Strand 3
A
99 101anti-parallel
Strand 4
A
249 255anti-parallel
Strand 5
A
240 246anti-parallel
Strand 6
A
310 316anti-parallel
Strand 7
A
297 304anti-parallel
Strand 8
A
285 292anti-parallel
Strand 9
A
218 221anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il