Analysis of interatomic Contacts of Structural Units in PDB entry:
4CFO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4CFO entry

There are 2 chains in PDB entry 4CFO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 33ARG 359
B
 ASP 33ARG 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 4CFO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 53Right-handed alpha
Helix 2
2
A
94 109Right-handed alpha
Helix 3
3
A
147 162Right-handed alpha
Helix 4
4
A
183 189Right-handed alpha
Helix 5
5
A
192 204Right-handed alpha
Helix 6
6
A
206 219Right-handed alpha
Helix 7
7
A
240 248Right-handed alpha
Helix 8
8
A
256 261Right-handed alpha
Helix 9
9
A
262 280Right-handed alpha
Helix 10
10
A
287 302Right-handed alpha
Helix 11
11
A
302 308Right-handed alpha
Helix 12
12
A
313 322Right-handed alpha
Helix 13
13
A
325 337Right-handed alpha
Helix 14
14
A
339 357Right-handed alpha
Helix 15
15
B
33 53Right-handed alpha
Helix 16
16
B
54 57Right-handed 310
Helix 17
17
B
98 108Right-handed alpha
Helix 18
18
B
112 116Right-handed 310
Helix 19
19
B
147 162Right-handed alpha
Helix 20
20
B
183 204Right-handed alpha
Helix 21
21
B
206 218Right-handed alpha
Helix 22
22
B
240 248Right-handed alpha
Helix 23
23
B
262 279Right-handed alpha
Helix 24
24
B
287 302Right-handed alpha
Helix 25
25
B
302 308Right-handed alpha
Helix 26
26
B
315 324Right-handed alpha
Helix 27
27
B
325 334Right-handed alpha
Helix 28
28
B
339 357Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 4CFO. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 69first strand
Strand 2
A
74 79anti-parallel
Strand 3
A
85 89anti-parallel
Strand 4
A
172 176anti-parallel
Strand 5
A
164 167anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 69first strand
Strand 2
B
74 79anti-parallel
Strand 3
B
84 89anti-parallel
Strand 4
B
172 179anti-parallel
Strand 5
B
164 167anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il