Analysis of interatomic Contacts of Structural Units in PDB entry:
4CJ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4CJ0 entry

There are 2 chains in PDB entry 4CJ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 42ASN 575
B
 VAL 2GLU 66
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 4CJ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
139 153Right-handed alpha
Helix 2
2
A
180 185Right-handed alpha
Helix 3
3
A
206 223Right-handed alpha
Helix 4
4
A
223 228Right-handed alpha
Helix 5
5
A
242 256Right-handed alpha
Helix 6
6
A
281 285Right-handed 310
Helix 7
7
A
295 314Right-handed alpha
Helix 8
8
A
317 338Right-handed alpha
Helix 9
9
A
359 375Right-handed alpha
Helix 10
10
A
376 388Right-handed alpha
Helix 11
11
A
403 414Right-handed alpha
Helix 12
12
A
420 445Right-handed alpha
Helix 13
13
A
458 477Right-handed alpha
Helix 14
14
A
479 494Right-handed alpha
Helix 15
15
A
517 523Right-handed alpha
Helix 16
16
A
550 555Right-handed alpha
Helix 17
17
A
557 570Right-handed alpha
Helix 18
18
B
52 54Right-handed 310
Helix 19
19
B
55 66Right-handed alpha
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There are 8 sheets in PDB entry 4CJ0. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
68 71anti-parallel
Strand 3
A
103 109anti-parallel
Strand 4
A
94 98anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
132 134parallel
Strand 3
A
117 123anti-parallel
Strand 4
A
127 128parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
132 134parallel
Strand 3
A
117 123anti-parallel
Strand 4
A
77 82anti-parallel
Strand 5
A
87 92anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
117 123parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 163first strand
Strand 2
A
166 170anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
270 272anti-parallel
Strand 3
A
290 291anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 8first strand
Strand 2
B
11 16anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 27first strand
Strand 2
B
32 38anti-parallel
Strand 3
B
46 50anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il