Analysis of interatomic Contacts of Structural Units in PDB entry:
4CJ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4CJ8 entry

There are 16 chains in PDB entry 4CJ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER -1	TYR 236
B	SER -1	TYR 236
C	SER -1	TYR 236
D	HIS 0	TYR 236
E	HIS 0	LYS 245
F	HIS 0	LYS 245
G	HIS 0	LYS 245
H	SER -1	LYS 245
I	MET 1	TYR 236
J	MET 1	TYR 236
K	HIS 0	TYR 236
L	MET 1	TYR 236
M	MET 1	LYS 245
N	MET 1	ARG 243
O	MET 1	GLU 240
P	MET 1	ARG 243

There are157 helices in PDB entry 4CJ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	12	15	Right-handed 310
Helix 2	2	A	16	25	Right-handed alpha
Helix 3	3	A	64	72	Right-handed alpha
Helix 4	4	A	72	78	Right-handed alpha
Helix 5	5	A	80	88	Right-handed alpha
Helix 6	6	A	105	109	Right-handed 310
Helix 7	7	A	129	133	Right-handed 310
Helix 8	8	A	163	183	Right-handed alpha
Helix 9	9	A	192	202	Right-handed alpha
Helix 10	10	A	209	213	Right-handed 310
Helix 11	11	B	12	15	Right-handed 310
Helix 12	12	B	16	25	Right-handed alpha
Helix 13	13	B	67	72	Right-handed alpha
Helix 14	14	B	72	78	Right-handed alpha
Helix 15	15	B	80	88	Right-handed alpha
Helix 16	16	B	105	109	Right-handed 310
Helix 17	17	B	129	133	Right-handed 310
Helix 18	18	B	163	183	Right-handed alpha
Helix 19	19	B	189	202	Right-handed alpha
Helix 20	20	B	209	213	Right-handed 310
Helix 21	21	C	10	15	Right-handed 310
Helix 22	22	C	16	25	Right-handed alpha
Helix 23	23	C	67	72	Right-handed alpha
Helix 24	24	C	72	78	Right-handed alpha
Helix 25	25	C	80	86	Right-handed alpha
Helix 26	26	C	105	109	Right-handed 310
Helix 27	27	C	129	133	Right-handed 310
Helix 28	28	C	163	183	Right-handed alpha
Helix 29	29	C	189	202	Right-handed alpha
Helix 30	30	C	209	213	Right-handed 310
Helix 31	31	D	10	15	Right-handed 310
Helix 32	32	D	16	25	Right-handed alpha
Helix 33	33	D	67	72	Right-handed alpha
Helix 34	34	D	72	78	Right-handed alpha
Helix 35	35	D	80	88	Right-handed alpha
Helix 36	36	D	105	109	Right-handed 310
Helix 37	37	D	129	133	Right-handed 310
Helix 38	38	D	163	183	Right-handed alpha
Helix 39	39	D	192	202	Right-handed alpha
Helix 40	40	D	209	213	Right-handed 310
Helix 41	41	E	10	15	Right-handed 310
Helix 42	42	E	16	25	Right-handed alpha
Helix 43	43	E	67	72	Right-handed alpha
Helix 44	44	E	72	79	Right-handed alpha
Helix 45	45	E	80	86	Right-handed alpha
Helix 46	46	E	105	109	Right-handed 310
Helix 47	47	E	129	133	Right-handed 310
Helix 48	48	E	163	182	Right-handed alpha
Helix 49	49	E	189	202	Right-handed alpha
Helix 50	50	E	209	213	Right-handed 310
Helix 51	51	F	12	15	Right-handed 310
Helix 52	52	F	16	25	Right-handed alpha
Helix 53	53	F	67	72	Right-handed alpha
Helix 54	54	F	72	78	Right-handed alpha
Helix 55	55	F	80	85	Right-handed alpha
Helix 56	56	F	105	109	Right-handed 310
Helix 57	57	F	129	133	Right-handed 310
Helix 58	58	F	163	183	Right-handed alpha
Helix 59	59	F	189	202	Right-handed alpha
Helix 60	60	F	209	213	Right-handed 310
Helix 61	61	G	12	15	Right-handed 310
Helix 62	62	G	16	25	Right-handed alpha
Helix 63	63	G	67	72	Right-handed alpha
Helix 64	64	G	72	79	Right-handed alpha
Helix 65	65	G	80	88	Right-handed alpha
Helix 66	66	G	105	109	Right-handed 310
Helix 67	67	G	129	133	Right-handed 310
Helix 68	68	G	163	183	Right-handed alpha
Helix 69	69	G	191	202	Right-handed alpha
Helix 70	70	G	209	213	Right-handed 310
Helix 71	71	H	12	15	Right-handed 310
Helix 72	72	H	16	25	Right-handed alpha
Helix 73	73	H	67	72	Right-handed alpha
Helix 74	74	H	72	78	Right-handed alpha
Helix 75	75	H	80	88	Right-handed alpha
Helix 76	76	H	105	109	Right-handed 310
Helix 77	77	H	163	183	Right-handed alpha
Helix 78	78	H	191	202	Right-handed alpha
Helix 79	79	H	209	213	Right-handed 310
Helix 80	80	I	10	15	Right-handed 310
Helix 81	81	I	16	28	Right-handed alpha
Helix 82	82	I	67	72	Right-handed alpha
Helix 83	83	I	72	78	Right-handed alpha
Helix 84	84	I	80	88	Right-handed alpha
Helix 85	85	I	105	109	Right-handed 310
Helix 86	86	I	129	133	Right-handed 310
Helix 87	87	I	163	183	Right-handed alpha
Helix 88	88	I	189	202	Right-handed alpha
Helix 89	89	I	209	213	Right-handed 310
Helix 90	90	J	12	15	Right-handed 310
Helix 91	91	J	16	25	Right-handed alpha
Helix 92	92	J	67	72	Right-handed alpha
Helix 93	93	J	72	78	Right-handed alpha
Helix 94	94	J	80	84	Right-handed 310
Helix 95	95	J	105	109	Right-handed 310
Helix 96	96	J	129	133	Right-handed 310
Helix 97	97	J	163	183	Right-handed alpha
Helix 98	98	J	189	202	Right-handed alpha
Helix 99	99	J	209	213	Right-handed 310
Helix 100	100	K	11	15	Right-handed 310
Helix 101	101	K	16	25	Right-handed alpha
Helix 102	102	K	67	72	Right-handed alpha
Helix 103	103	K	72	78	Right-handed alpha
Helix 104	104	K	80	88	Right-handed alpha
Helix 105	105	K	105	109	Right-handed 310
Helix 106	106	K	129	133	Right-handed 310
Helix 107	107	K	163	183	Right-handed alpha
Helix 108	108	K	189	202	Right-handed alpha
Helix 109	109	K	209	213	Right-handed 310
Helix 110	110	L	10	15	Right-handed 310
Helix 111	111	L	16	25	Right-handed alpha
Helix 112	112	L	72	79	Right-handed alpha
Helix 113	113	L	80	84	Right-handed 310
Helix 114	114	L	105	109	Right-handed 310
Helix 115	115	L	129	133	Right-handed 310
Helix 116	116	L	163	183	Right-handed alpha
Helix 117	117	L	189	202	Right-handed alpha
Helix 118	118	L	209	213	Right-handed 310
Helix 119	119	M	12	15	Right-handed 310
Helix 120	120	M	16	25	Right-handed alpha
Helix 121	121	M	67	72	Right-handed alpha
Helix 122	122	M	72	78	Right-handed alpha
Helix 123	123	M	80	85	Right-handed alpha
Helix 124	124	M	105	109	Right-handed 310
Helix 125	125	M	123	126	Right-handed 310
Helix 126	126	M	129	133	Right-handed 310
Helix 127	127	M	163	183	Right-handed alpha
Helix 128	128	M	191	202	Right-handed alpha
Helix 129	129	M	209	213	Right-handed 310
Helix 130	130	N	15	24	Right-handed alpha
Helix 131	131	N	67	72	Right-handed alpha
Helix 132	132	N	77	79	Right-handed 310
Helix 133	133	N	80	88	Right-handed alpha
Helix 134	134	N	105	109	Right-handed 310
Helix 135	135	N	129	133	Right-handed 310
Helix 136	136	N	163	183	Right-handed alpha
Helix 137	137	N	191	202	Right-handed alpha
Helix 138	138	N	209	213	Right-handed 310
Helix 139	139	O	12	15	Right-handed 310
Helix 140	140	O	16	27	Right-handed alpha
Helix 141	141	O	67	72	Right-handed alpha
Helix 142	142	O	80	88	Right-handed alpha
Helix 143	143	O	105	109	Right-handed 310
Helix 144	144	O	129	133	Right-handed 310
Helix 145	145	O	163	182	Right-handed alpha
Helix 146	146	O	189	202	Right-handed alpha
Helix 147	147	O	209	213	Right-handed 310
Helix 148	148	P	12	14	Right-handed 310
Helix 149	149	P	15	25	Right-handed alpha
Helix 150	150	P	67	72	Right-handed alpha
Helix 151	151	P	72	78	Right-handed alpha
Helix 152	152	P	80	88	Right-handed alpha
Helix 153	153	P	105	109	Right-handed 310
Helix 154	154	P	129	133	Right-handed 310
Helix 155	155	P	163	182	Right-handed alpha
Helix 156	156	P	190	202	Right-handed alpha
Helix 157	157	P	209	213	Right-handed 310

There are 32 sheets in PDB entry 4CJ8. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB, EA, EB, FA, FB, GA, GB, HA, HB, IA, IB, JA, JB, KA, KB, LA, LB, MA, MB, NA, NB, OA, OB, PA, PB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	60	first strand
Strand 2	A	34	42	parallel
Strand 3	A	1	8	parallel
Strand 4	A	90	94	parallel
Strand 5	A	154	162	anti-parallel
Strand 6	A	117	121	anti-parallel
Strand 7	A	206	208	parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	226	228	anti-parallel
Strand 3	A	214	215	parallel

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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	60	first strand
Strand 2	B	34	42	parallel
Strand 3	B	1	8	parallel
Strand 4	B	90	94	parallel
Strand 5	B	154	162	anti-parallel
Strand 6	B	117	121	anti-parallel
Strand 7	B	206	208	parallel

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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	100	first strand
Strand 2	B	226	228	anti-parallel
Strand 3	B	214	215	parallel

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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	60	first strand
Strand 2	C	34	42	parallel
Strand 3	C	1	8	parallel
Strand 4	C	90	94	parallel
Strand 5	C	154	162	anti-parallel
Strand 6	C	117	121	anti-parallel
Strand 7	C	206	208	parallel

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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	100	first strand
Strand 2	C	226	228	anti-parallel
Strand 3	C	214	215	parallel

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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	60	first strand
Strand 2	D	34	42	parallel
Strand 3	D	1	8	parallel
Strand 4	D	90	94	parallel
Strand 5	D	154	162	anti-parallel
Strand 6	D	117	121	anti-parallel
Strand 7	D	206	208	parallel

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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	100	first strand
Strand 2	D	226	228	anti-parallel
Strand 3	D	214	215	parallel

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There are 7 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	60	first strand
Strand 2	E	34	42	parallel
Strand 3	E	1	8	parallel
Strand 4	E	90	94	parallel
Strand 5	E	154	162	anti-parallel
Strand 6	E	117	121	anti-parallel
Strand 7	E	206	208	parallel

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There are 3 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	100	first strand
Strand 2	E	226	228	anti-parallel
Strand 3	E	214	215	parallel

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There are 7 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	60	first strand
Strand 2	F	34	42	parallel
Strand 3	F	1	8	parallel
Strand 4	F	90	94	parallel
Strand 5	F	158	162	anti-parallel
Strand 6	F	117	120	anti-parallel
Strand 7	F	206	208	parallel

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There are 3 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	100	first strand
Strand 2	F	226	228	anti-parallel
Strand 3	F	214	215	parallel

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There are 7 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	56	60	first strand
Strand 2	G	34	42	parallel
Strand 3	G	1	8	parallel
Strand 4	G	90	94	parallel
Strand 5	G	154	162	anti-parallel
Strand 6	G	117	121	anti-parallel
Strand 7	G	206	208	parallel

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There are 3 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	98	100	first strand
Strand 2	G	226	228	anti-parallel
Strand 3	G	214	215	parallel

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There are 7 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	60	first strand
Strand 2	H	35	42	parallel
Strand 3	H	2	8	parallel
Strand 4	H	90	94	parallel
Strand 5	H	158	162	anti-parallel
Strand 6	H	117	120	anti-parallel
Strand 7	H	206	208	parallel

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There are 3 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	98	100	first strand
Strand 2	H	226	228	anti-parallel
Strand 3	H	214	215	parallel

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There are 7 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	56	60	first strand
Strand 2	I	35	42	parallel
Strand 3	I	2	8	parallel
Strand 4	I	90	94	parallel
Strand 5	I	158	162	anti-parallel
Strand 6	I	117	120	anti-parallel
Strand 7	I	206	208	parallel

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There are 3 strands in IB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	98	100	first strand
Strand 2	I	226	228	anti-parallel
Strand 3	I	214	215	parallel

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There are 7 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	56	60	first strand
Strand 2	J	35	42	parallel
Strand 3	J	2	8	parallel
Strand 4	J	90	94	parallel
Strand 5	J	154	162	anti-parallel
Strand 6	J	117	121	anti-parallel
Strand 7	J	206	208	parallel

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There are 3 strands in JB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	98	100	first strand
Strand 2	J	226	228	anti-parallel
Strand 3	J	214	215	parallel

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There are 7 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	56	60	first strand
Strand 2	K	34	42	parallel
Strand 3	K	1	8	parallel
Strand 4	K	90	94	parallel
Strand 5	K	154	162	anti-parallel
Strand 6	K	117	121	anti-parallel
Strand 7	K	206	208	parallel

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There are 3 strands in KB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	98	100	first strand
Strand 2	K	226	228	anti-parallel
Strand 3	K	214	215	parallel

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There are 7 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	56	60	first strand
Strand 2	L	35	42	parallel
Strand 3	L	2	8	parallel
Strand 4	L	90	94	parallel
Strand 5	L	158	162	anti-parallel
Strand 6	L	117	120	anti-parallel
Strand 7	L	206	208	parallel

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There are 3 strands in LB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	98	100	first strand
Strand 2	L	226	228	anti-parallel
Strand 3	L	214	215	parallel

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There are 7 strands in MA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	56	60	first strand
Strand 2	M	35	42	parallel
Strand 3	M	2	8	parallel
Strand 4	M	90	94	parallel
Strand 5	M	154	162	anti-parallel
Strand 6	M	117	121	anti-parallel
Strand 7	M	206	208	parallel

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There are 3 strands in MB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	98	100	first strand
Strand 2	M	226	228	anti-parallel
Strand 3	M	214	215	parallel

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There are 7 strands in NA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	56	60	first strand
Strand 2	N	35	42	parallel
Strand 3	N	2	9	parallel
Strand 4	N	90	94	parallel
Strand 5	N	154	162	anti-parallel
Strand 6	N	117	121	anti-parallel
Strand 7	N	206	208	parallel

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There are 3 strands in NB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	98	100	first strand
Strand 2	N	226	228	anti-parallel
Strand 3	N	214	215	parallel

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There are 7 strands in OA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	56	60	first strand
Strand 2	O	35	42	parallel
Strand 3	O	2	8	parallel
Strand 4	O	90	94	parallel
Strand 5	O	154	162	anti-parallel
Strand 6	O	117	121	anti-parallel
Strand 7	O	206	208	parallel

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There are 3 strands in OB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	98	100	first strand
Strand 2	O	226	228	anti-parallel
Strand 3	O	214	215	parallel

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There are 7 strands in PA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	56	60	first strand
Strand 2	P	35	42	parallel
Strand 3	P	2	8	parallel
Strand 4	P	90	94	parallel
Strand 5	P	154	162	anti-parallel
Strand 6	P	117	121	anti-parallel
Strand 7	P	206	208	parallel

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There are 3 strands in PB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	98	100	first strand
Strand 2	P	226	228	anti-parallel
Strand 3	P	214	215	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4CJ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
4CJ8