Analysis of interatomic Contacts of Structural Units in PDB entry:
4CJB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4CJB entry

There are 4 chains in PDB entry 4CJB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 236
B
 MET 1TYR 236
C
 MET 1GLY 237
D
 MET 1GLN 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 4CJB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 15Right-handed 310
Helix 2
2
A
16 28Right-handed alpha
Helix 3
3
A
67 72Right-handed alpha
Helix 4
4
A
72 79Right-handed alpha
Helix 5
5
A
80 88Right-handed alpha
Helix 6
6
A
105 109Right-handed 310
Helix 7
7
A
129 133Right-handed 310
Helix 8
8
A
163 183Right-handed alpha
Helix 9
9
A
189 202Right-handed alpha
Helix 10
10
A
209 213Right-handed 310
Helix 11
11
B
10 15Right-handed 310
Helix 12
12
B
16 28Right-handed alpha
Helix 13
13
B
67 72Right-handed alpha
Helix 14
14
B
72 78Right-handed alpha
Helix 15
15
B
80 88Right-handed alpha
Helix 16
16
B
105 109Right-handed 310
Helix 17
17
B
129 133Right-handed 310
Helix 18
18
B
163 182Right-handed alpha
Helix 19
19
B
190 202Right-handed alpha
Helix 20
20
B
209 213Right-handed 310
Helix 21
21
C
10 15Right-handed 310
Helix 22
22
C
16 28Right-handed alpha
Helix 23
23
C
67 72Right-handed alpha
Helix 24
24
C
72 78Right-handed alpha
Helix 25
25
C
80 88Right-handed alpha
Helix 26
26
C
105 109Right-handed 310
Helix 27
27
C
129 133Right-handed 310
Helix 28
28
C
163 182Right-handed alpha
Helix 29
29
C
189 202Right-handed alpha
Helix 30
30
C
209 213Right-handed 310
Helix 31
31
D
10 14Right-handed 310
Helix 32
32
D
16 28Right-handed alpha
Helix 33
33
D
67 72Right-handed alpha
Helix 34
34
D
72 79Right-handed alpha
Helix 35
35
D
80 88Right-handed alpha
Helix 36
36
D
105 109Right-handed 310
Helix 37
37
D
129 133Right-handed 310
Helix 38
38
D
163 182Right-handed alpha
Helix 39
39
D
183 185Right-handed 310
Helix 40
40
D
189 202Right-handed alpha
Helix 41
41
D
209 213Right-handed 310
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There are 8 sheets in PDB entry 4CJB. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
35 42parallel
Strand 3
A
2 8parallel
Strand 4
A
90 94parallel
Strand 5
A
158 162anti-parallel
Strand 6
A
117 120anti-parallel
Strand 7
A
206 208parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 100first strand
Strand 2
A
226 228anti-parallel
Strand 3
A
214 215parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 60first strand
Strand 2
B
35 42parallel
Strand 3
B
2 8parallel
Strand 4
B
90 94parallel
Strand 5
B
154 162anti-parallel
Strand 6
B
117 121anti-parallel
Strand 7
B
206 208parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 100first strand
Strand 2
B
226 228anti-parallel
Strand 3
B
214 215parallel
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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 60first strand
Strand 2
C
35 42parallel
Strand 3
C
2 8parallel
Strand 4
C
90 94parallel
Strand 5
C
154 162anti-parallel
Strand 6
C
117 121anti-parallel
Strand 7
C
206 208parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
98 100first strand
Strand 2
C
226 228anti-parallel
Strand 3
C
214 215parallel
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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 60first strand
Strand 2
D
35 42parallel
Strand 3
D
2 8parallel
Strand 4
D
90 94parallel
Strand 5
D
158 162anti-parallel
Strand 6
D
117 120anti-parallel
Strand 7
D
206 208parallel
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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
98 100first strand
Strand 2
D
226 228anti-parallel
Strand 3
D
214 215parallel
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