Analysis of interatomic Contacts of Structural Units in PDB entry:
4CJM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4CJM entry

There are 4 chains in PDB entry 4CJM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 51PRO 179
B
 GLN 51TYR 178
C
 GLN 51TYR 178
D
 LYS 50TYR 178
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4CJM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
81 84Right-handed 310
Helix 2
2
A
124 127Right-handed 310
Helix 3
3
A
161 165Right-handed 310
Helix 4
4
A
169 172Right-handed 310
Helix 5
5
B
81 84Right-handed 310
Helix 6
6
B
124 127Right-handed 310
Helix 7
7
B
161 165Right-handed 310
Helix 8
8
B
169 172Right-handed 310
Helix 9
9
C
81 84Right-handed 310
Helix 10
10
C
124 127Right-handed 310
Helix 11
11
C
161 165Right-handed 310
Helix 12
12
C
169 172Right-handed 310
Helix 13
13
D
81 84Right-handed 310
Helix 14
14
D
124 127Right-handed 310
Helix 15
15
D
161 165Right-handed 310
Helix 16
16
D
169 172Right-handed 310
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There are 12 sheets in PDB entry 4CJM. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB, C,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 59first strand
Strand 2
A
86 90anti-parallel
Strand 3
A
96 101anti-parallel
Strand 4
A
129 133anti-parallel
Strand 5
A
139 143anti-parallel
Strand 6
A
174 177anti-parallel
Strand 7
A
52 59anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 68first strand
Strand 2
A
73 77anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 110first strand
Strand 2
A
116 119anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 59first strand
Strand 2
B
86 90anti-parallel
Strand 3
B
96 101anti-parallel
Strand 4
B
129 133anti-parallel
Strand 5
B
139 143anti-parallel
Strand 6
B
174 177anti-parallel
Strand 7
B
52 59anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 68first strand
Strand 2
B
73 77anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 110first strand
Strand 2
B
116 119anti-parallel
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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 59first strand
Strand 2
C
86 91anti-parallel
Strand 3
C
96 101anti-parallel
Strand 4
C
129 133anti-parallel
Strand 5
C
139 143anti-parallel
Strand 6
C
174 177anti-parallel
Strand 7
C
52 59anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
65 68first strand
Strand 2
C
73 77anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
107 110first strand
Strand 2
C
116 119anti-parallel
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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 59first strand
Strand 2
D
86 91anti-parallel
Strand 3
D
96 101anti-parallel
Strand 4
D
129 133anti-parallel
Strand 5
D
139 143anti-parallel
Strand 6
D
174 177anti-parallel
Strand 7
D
51 59anti-parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
65 68first strand
Strand 2
D
73 77anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
107 110first strand
Strand 2
D
116 119anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il