Analysis of interatomic Contacts of Structural Units in PDB entry:
4CJN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4CJN entry

There are 2 chains in PDB entry 4CJN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 27GLU 668
B
 ASP 27ILE 631
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 4CJN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 39Right-handed alpha
Helix 2
2
A
41 48Right-handed alpha
Helix 3
3
A
50 58Right-handed alpha
Helix 4
4
A
58 64Right-handed alpha
Helix 5
5
A
64 74Right-handed alpha
Helix 6
6
A
128 132Right-handed 310
Helix 7
7
A
174 178Right-handed 310
Helix 8
8
A
179 181Right-handed 310
Helix 9
9
A
182 191Right-handed alpha
Helix 10
10
A
193 202Right-handed alpha
Helix 11
11
A
221 232Right-handed alpha
Helix 12
12
A
245 248Right-handed 310
Helix 13
13
A
249 254Right-handed alpha
Helix 14
14
A
260 265Right-handed alpha
Helix 15
15
A
266 270Right-handed 310
Helix 16
16
A
281 287Right-handed alpha
Helix 17
17
A
287 292Right-handed alpha
Helix 18
18
A
329 341Right-handed alpha
Helix 19
19
A
368 374Right-handed alpha
Helix 20
20
A
376 385Right-handed alpha
Helix 21
21
A
401 403Right-handed 310
Helix 22
22
A
404 416Right-handed alpha
Helix 23
23
A
435 439Right-handed 310
Helix 24
24
A
455 461Right-handed alpha
Helix 25
25
A
463 475Right-handed alpha
Helix 26
26
A
475 486Right-handed alpha
Helix 27
27
A
504 509Right-handed alpha
Helix 28
28
A
510 519Right-handed alpha
Helix 29
29
A
527 537Right-handed alpha
Helix 30
30
A
538 540Right-handed 310
Helix 31
31
A
564 581Right-handed alpha
Helix 32
32
A
641 657Right-handed alpha
Helix 33
33
A
658 661Right-handed 310
Helix 34
34
B
29 39Right-handed alpha
Helix 35
35
B
41 48Right-handed alpha
Helix 36
36
B
50 58Right-handed alpha
Helix 37
37
B
58 64Right-handed alpha
Helix 38
38
B
64 74Right-handed alpha
Helix 39
39
B
128 132Right-handed 310
Helix 40
40
B
174 178Right-handed 310
Helix 41
41
B
179 181Right-handed 310
Helix 42
42
B
182 190Right-handed alpha
Helix 43
43
B
193 202Right-handed alpha
Helix 44
44
B
221 232Right-handed alpha
Helix 45
45
B
245 248Right-handed 310
Helix 46
46
B
249 254Right-handed alpha
Helix 47
47
B
260 265Right-handed alpha
Helix 48
48
B
281 287Right-handed alpha
Helix 49
49
B
287 292Right-handed alpha
Helix 50
50
B
329 341Right-handed alpha
Helix 51
51
B
368 374Right-handed alpha
Helix 52
52
B
376 385Right-handed alpha
Helix 53
53
B
401 403Right-handed 310
Helix 54
54
B
404 416Right-handed alpha
Helix 55
55
B
435 439Right-handed 310
Helix 56
56
B
455 462Right-handed alpha
Helix 57
57
B
463 475Right-handed alpha
Helix 58
58
B
475 486Right-handed alpha
Helix 59
59
B
504 509Right-handed alpha
Helix 60
60
B
510 519Right-handed alpha
Helix 61
61
B
527 537Right-handed alpha
Helix 62
62
B
538 540Right-handed 310
Helix 63
63
B
564 577Right-handed alpha
Helix 64
64
B
643 657Right-handed alpha
Helix 65
65
B
658 661Right-handed 310
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There are 24 sheets in PDB entry 4CJN. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 89first strand
Strand 2
A
92 103anti-parallel
Strand 3
A
106 118anti-parallel
Strand 4
A
123 125anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 147first strand
Strand 2
A
296 303anti-parallel
Strand 3
A
309 316anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 217first strand
Strand 2
A
161 173parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 242first strand
Strand 2
A
161 173anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 325first strand
Strand 2
A
154 155parallel
Strand 3
A
161 173anti-parallel
Strand 4
A
212 217parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 325first strand
Strand 2
A
154 155parallel
Strand 3
A
161 173anti-parallel
Strand 4
A
234 242anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 258first strand
Strand 2
A
277 279anti-parallel
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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 363first strand
Strand 2
A
345 350anti-parallel
Strand 3
A
628 634anti-parallel
Strand 4
A
613 621anti-parallel
Strand 5
A
594 602anti-parallel
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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 427first strand
Strand 2
A
451 454anti-parallel
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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 432first strand
Strand 2
A
443 444anti-parallel
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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
544 545first strand
Strand 2
A
557 559anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 89first strand
Strand 2
B
92 103anti-parallel
Strand 3
B
106 118anti-parallel
Strand 4
B
123 125anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 147first strand
Strand 2
B
296 303anti-parallel
Strand 3
B
309 316anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 217first strand
Strand 2
B
161 173parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 242first strand
Strand 2
B
161 173anti-parallel
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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 325first strand
Strand 2
B
154 155parallel
Strand 3
B
161 173anti-parallel
Strand 4
B
212 217parallel
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There are 4 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 325first strand
Strand 2
B
154 155parallel
Strand 3
B
161 173anti-parallel
Strand 4
B
234 242anti-parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 258first strand
Strand 2
B
277 279anti-parallel
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There are 5 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 363first strand
Strand 2
B
345 350anti-parallel
Strand 3
B
628 634anti-parallel
Strand 4
B
613 621anti-parallel
Strand 5
B
599 602parallel
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There are 5 strands in BI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 363first strand
Strand 2
B
345 350anti-parallel
Strand 3
B
628 634anti-parallel
Strand 4
B
613 621anti-parallel
Strand 5
B
594 595anti-parallel
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There are 2 strands in BJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
599 602first strand
Strand 2
B
613 621parallel
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There are 2 strands in BK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
424 427first strand
Strand 2
B
451 454anti-parallel
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There are 2 strands in BL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
431 432first strand
Strand 2
B
443 444anti-parallel
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There are 2 strands in BM sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
544 545first strand
Strand 2
B
557 559anti-parallel
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