Analysis of interatomic Contacts of Structural Units in PDB entry:
4CMF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4CMF entry

There is 1 chain in PDB entry 4CMF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4CMF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 20Right-handed alpha
Helix 2
2
A
40 42Right-handed 310
Helix 3
3
A
48 53Right-handed alpha
Helix 4
4
A
70 85Right-handed alpha
Helix 5
5
A
92 108Right-handed alpha
Helix 6
6
A
129 133Right-handed 310
Helix 7
7
A
150 155Right-handed alpha
Helix 8
8
A
183 196Right-handed alpha
Helix 9
9
A
236 249Right-handed alpha
Helix 10
10
A
260 266Right-handed alpha
Helix 11
11
A
295 308Right-handed alpha
Helix 12
12
A
309 311Right-handed 310
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There are 4 sheets in PDB entry 4CMF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
29 32anti-parallel
Strand 3
A
137 144anti-parallel
Strand 4
A
112 119anti-parallel
Strand 5
A
56 59anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
315 317anti-parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 255first strand
Strand 2
A
225 228parallel
Strand 3
A
216 222anti-parallel
Strand 4
A
210 213anti-parallel
Strand 5
A
200 204anti-parallel
Strand 6
A
158 162parallel
Strand 7
A
277 284parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 255first strand
Strand 2
A
277 284anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il