Analysis of interatomic Contacts of Structural Units in PDB entry:
4CMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4CMP entry

There is 1 chain in PDB entry 4CMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 4ALA 725
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are122 helices in PDB entry 4CMP. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
58 64Right-handed alpha
Helix 2
2
A
67 94Right-handed alpha
Helix 3
3
A
96 101Right-handed alpha
Helix 4
4
A
121 132Right-handed alpha
Helix 5
5
A
134 145Right-handed alpha
Helix 6
6
A
150 164Right-handed alpha
Helix 7
7
A
175 179Right-handed 310
Helix 8
8
A
180 196Right-handed alpha
Helix 9
9
A
207 214Right-handed alpha
Helix 10
10
A
217 227Right-handed alpha
Helix 11
11
A
236 247Right-handed alpha
Helix 12
12
A
252 257Right-handed alpha
Helix 13
13
A
270 283Right-handed alpha
Helix 14
14
A
286 307Right-handed alpha
Helix 15
15
A
315 343Right-handed alpha
Helix 16
16
A
344 353Right-handed alpha
Helix 17
17
A
358 364Right-handed alpha
Helix 18
18
A
368 384Right-handed alpha
Helix 19
19
A
387 395Right-handed alpha
Helix 20
20
A
411 427Right-handed alpha
Helix 21
21
A
430 446Right-handed alpha
Helix 22
22
A
512 525Right-handed alpha
Helix 23
23
A
541 552Right-handed alpha
Helix 24
24
A
560 567Right-handed alpha
Helix 25
25
A
591 602Right-handed alpha
Helix 26
26
A
603 609Right-handed alpha
Helix 27
27
A
612 626Right-handed alpha
Helix 28
28
A
628 637Right-handed alpha
Helix 29
29
A
638 640Right-handed 310
Helix 30
30
A
644 654Right-handed alpha
Helix 31
31
A
663 669Right-handed alpha
Helix 32
32
A
678 684Right-handed alpha
Helix 33
33
A
692 698Right-handed alpha
Helix 34
34
A
703 714Right-handed alpha
Helix 35
35
A
718 726Right-handed alpha
Helix 36
36
A
730 751Right-handed alpha
Helix 37
37
A
775 789Right-handed alpha
Helix 38
38
A
802 807Right-handed 310
Helix 39
39
A
808 817Right-handed alpha
Helix 40
40
A
829 837Right-handed alpha
Helix 41
41
A
851 853Right-handed 310
Helix 42
42
A
875 878Right-handed 310
Helix 43
43
A
879 889Right-handed alpha
Helix 44
44
A
893 902Right-handed alpha
Helix 45
45
A
909 922Right-handed alpha
Helix 46
46
A
925 940Right-handed alpha
Helix 47
47
A
959 970Right-handed alpha
Helix 48
48
A
980 1001Right-handed alpha
Helix 49
49
A
1004 1009Right-handed alpha
Helix 50
50
A
1017 1022Right-handed alpha
Helix 51
51
A
1041 1047Right-handed 310
Helix 52
52
A
1077 1089Right-handed alpha
Helix 53
53
A
1168 1177Right-handed alpha
Helix 54
54
A
1177 1186Right-handed alpha
Helix 55
55
A
1229 1241Right-handed alpha
Helix 56
56
A
1263 1281Right-handed alpha
Helix 57
57
A
1283 1297Right-handed alpha
Helix 58
58
A
1301 1312Right-handed alpha
Helix 59
59
A
1312 1317Right-handed alpha
Helix 60
60
A
1341 1345Right-handed 310
Helix 61
61
B
58 64Right-handed alpha
Helix 62
62
B
67 94Right-handed alpha
Helix 63
63
B
96 101Right-handed alpha
Helix 64
64
B
121 132Right-handed alpha
Helix 65
65
B
134 145Right-handed alpha
Helix 66
66
B
150 164Right-handed alpha
Helix 67
67
B
175 179Right-handed 310
Helix 68
68
B
180 196Right-handed alpha
Helix 69
69
B
207 213Right-handed alpha
Helix 70
70
B
217 228Right-handed alpha
Helix 71
71
B
236 247Right-handed alpha
Helix 72
72
B
270 283Right-handed alpha
Helix 73
73
B
286 307Right-handed alpha
Helix 74
74
B
315 343Right-handed alpha
Helix 75
75
B
343 353Right-handed alpha
Helix 76
76
B
354 357Right-handed 310
Helix 77
77
B
358 365Right-handed alpha
Helix 78
78
B
368 384Right-handed alpha
Helix 79
79
B
387 396Right-handed alpha
Helix 80
80
B
411 427Right-handed alpha
Helix 81
81
B
430 436Right-handed alpha
Helix 82
82
B
436 446Right-handed alpha
Helix 83
83
B
512 524Right-handed alpha
Helix 84
84
B
525 527Right-handed 310
Helix 85
85
B
543 552Right-handed alpha
Helix 86
86
B
560 570Right-handed alpha
Helix 87
87
B
591 601Right-handed alpha
Helix 88
88
B
603 608Right-handed alpha
Helix 89
89
B
609 626Right-handed alpha
Helix 90
90
B
628 636Right-handed alpha
Helix 91
91
B
644 654Right-handed alpha
Helix 92
92
B
663 670Right-handed alpha
Helix 93
93
B
678 686Right-handed alpha
Helix 94
94
B
692 698Right-handed alpha
Helix 95
95
B
702 713Right-handed alpha
Helix 96
96
B
718 726Right-handed alpha
Helix 97
97
B
730 751Right-handed alpha
Helix 98
98
B
773 789Right-handed alpha
Helix 99
99
B
802 807Right-handed 310
Helix 100
100
B
808 817Right-handed alpha
Helix 101
101
B
829 834Right-handed alpha
Helix 102
102
B
851 853Right-handed 310
Helix 103
103
B
862 867Right-handed alpha
Helix 104
104
B
879 889Right-handed alpha
Helix 105
105
B
893 902Right-handed alpha
Helix 106
106
B
909 922Right-handed alpha
Helix 107
107
B
925 940Right-handed alpha
Helix 108
108
B
959 971Right-handed alpha
Helix 109
109
B
981 1001Right-handed alpha
Helix 110
110
B
1004 1009Right-handed alpha
Helix 111
111
B
1017 1022Right-handed alpha
Helix 112
112
B
1041 1047Right-handed 310
Helix 113
113
B
1076 1089Right-handed alpha
Helix 114
114
B
1168 1176Right-handed alpha
Helix 115
115
B
1177 1185Right-handed alpha
Helix 116
116
B
1229 1241Right-handed alpha
Helix 117
117
B
1257 1262Right-handed alpha
Helix 118
118
B
1264 1281Right-handed alpha
Helix 119
119
B
1283 1297Right-handed alpha
Helix 120
120
B
1301 1312Right-handed alpha
Helix 121
121
B
1312 1317Right-handed alpha
Helix 122
122
B
1340 1344Right-handed 310
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There are 15 sheets in PDB entry 4CMP. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB, BC, BD, BE, BF, BG,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
954 957first strand
Strand 2
A
758 763parallel
Strand 3
A
6 11parallel
Strand 4
A
15 21anti-parallel
Strand 5
A
48 52anti-parallel
Strand 6
A
1093 1096parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
29 33first strand
Strand 2
A
42 46anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
838 840first strand
Strand 2
A
855 857anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1049 1051first strand
Strand 2
A
1057 1059anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1063 1065first strand
Strand 2
A
1072 1075anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1162 1167first strand
Strand 2
A
1139 1145anti-parallel
Strand 3
A
1197 1198anti-parallel
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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1219 1222first strand
Strand 2
A
1210 1216anti-parallel
Strand 3
A
1202 1206anti-parallel
Strand 4
A
1346 1350anti-parallel
Strand 5
A
1357 1360anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1324 1326first strand
Strand 2
A
1329 1331anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
954 957first strand
Strand 2
B
758 762parallel
Strand 3
B
6 11parallel
Strand 4
B
15 21anti-parallel
Strand 5
B
48 52anti-parallel
Strand 6
B
1093 1096parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
42 46first strand
Strand 2
B
29 36anti-parallel
Strand 3
B
1357 1361parallel
Strand 4
B
1346 1350anti-parallel
Strand 5
B
1202 1206anti-parallel
Strand 6
B
1210 1214anti-parallel
Strand 7
B
1220 1222anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
839 840first strand
Strand 2
B
855 856anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1049 1051first strand
Strand 2
B
1057 1059anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1063 1065first strand
Strand 2
B
1072 1075anti-parallel
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There are 3 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1161 1167first strand
Strand 2
B
1139 1146anti-parallel
Strand 3
B
1196 1198anti-parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1324 1326first strand
Strand 2
B
1329 1331anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il