Analysis of interatomic Contacts of Structural Units in PDB entry:
4CMY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4CMY entry

There are 24 chains in PDB entry 4CMY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 163
B	MET 1	LEU 164
C	MET 1	VAL 163
D	MET 1	VAL 163
E	MET 1	VAL 163
F	MET 1	VAL 163
G	MET 1	VAL 163
H	MET 1	VAL 163
I	MET 1	LEU 164
J	MET 1	LEU 164
K	MET 1	VAL 163
L	MET 1	VAL 163
M	MET 1	VAL 163
N	MET 1	LEU 164
O	MET 1	LEU 164
P	MET 1	VAL 163
Q	MET 1	VAL 163
R	MET 1	VAL 163
S	MET 1	SER 162
T	MET 1	VAL 163
U	MET 1	LEU 164
V	MET 1	VAL 163
W	MET 1	LEU 164
X	MET 1	VAL 163

There are123 helices in PDB entry 4CMY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	3	34	Right-handed alpha
Helix 2	2	A	36	64	Right-handed alpha
Helix 3	3	A	82	111	Right-handed alpha
Helix 4	4	A	113	120	Right-handed alpha
Helix 5	5	A	120	145	Right-handed alpha
Helix 6	6	A	146	163	Right-handed alpha
Helix 7	7	B	3	34	Right-handed alpha
Helix 8	8	B	36	64	Right-handed alpha
Helix 9	9	B	82	111	Right-handed alpha
Helix 10	10	B	113	120	Right-handed alpha
Helix 11	11	B	120	145	Right-handed alpha
Helix 12	12	B	146	163	Right-handed alpha
Helix 13	13	C	3	34	Right-handed alpha
Helix 14	14	C	36	64	Right-handed alpha
Helix 15	15	C	82	111	Right-handed alpha
Helix 16	16	C	113	145	Right-handed alpha
Helix 17	17	C	146	163	Right-handed alpha
Helix 18	18	D	3	34	Right-handed alpha
Helix 19	19	D	36	64	Right-handed alpha
Helix 20	20	D	82	111	Right-handed alpha
Helix 21	21	D	113	145	Right-handed alpha
Helix 22	22	D	146	163	Right-handed alpha
Helix 23	23	E	3	34	Right-handed alpha
Helix 24	24	E	36	64	Right-handed alpha
Helix 25	25	E	82	111	Right-handed alpha
Helix 26	26	E	113	145	Right-handed alpha
Helix 27	27	E	146	163	Right-handed alpha
Helix 28	28	F	3	34	Right-handed alpha
Helix 29	29	F	36	64	Right-handed alpha
Helix 30	30	F	82	111	Right-handed alpha
Helix 31	31	F	113	145	Right-handed alpha
Helix 32	32	F	146	163	Right-handed alpha
Helix 33	33	G	3	34	Right-handed alpha
Helix 34	34	G	36	64	Right-handed alpha
Helix 35	35	G	82	111	Right-handed alpha
Helix 36	36	G	113	145	Right-handed alpha
Helix 37	37	G	146	163	Right-handed alpha
Helix 38	38	H	3	34	Right-handed alpha
Helix 39	39	H	36	64	Right-handed alpha
Helix 40	40	H	82	111	Right-handed alpha
Helix 41	41	H	113	145	Right-handed alpha
Helix 42	42	H	146	163	Right-handed alpha
Helix 43	43	I	3	34	Right-handed alpha
Helix 44	44	I	36	64	Right-handed alpha
Helix 45	45	I	82	111	Right-handed alpha
Helix 46	46	I	113	145	Right-handed alpha
Helix 47	47	I	146	163	Right-handed alpha
Helix 48	48	J	3	34	Right-handed alpha
Helix 49	49	J	36	64	Right-handed alpha
Helix 50	50	J	82	111	Right-handed alpha
Helix 51	51	J	113	145	Right-handed alpha
Helix 52	52	J	146	163	Right-handed alpha
Helix 53	53	K	3	34	Right-handed alpha
Helix 54	54	K	36	64	Right-handed alpha
Helix 55	55	K	82	111	Right-handed alpha
Helix 56	56	K	113	145	Right-handed alpha
Helix 57	57	K	146	163	Right-handed alpha
Helix 58	58	L	3	34	Right-handed alpha
Helix 59	59	L	36	64	Right-handed alpha
Helix 60	60	L	82	111	Right-handed alpha
Helix 61	61	L	113	145	Right-handed alpha
Helix 62	62	L	146	163	Right-handed alpha
Helix 63	63	M	3	34	Right-handed alpha
Helix 64	64	M	36	64	Right-handed alpha
Helix 65	65	M	82	111	Right-handed alpha
Helix 66	66	M	113	145	Right-handed alpha
Helix 67	67	M	146	163	Right-handed alpha
Helix 68	68	N	3	34	Right-handed alpha
Helix 69	69	N	36	64	Right-handed alpha
Helix 70	70	N	82	111	Right-handed alpha
Helix 71	71	N	113	145	Right-handed alpha
Helix 72	72	N	146	163	Right-handed alpha
Helix 73	73	O	3	34	Right-handed alpha
Helix 74	74	O	36	64	Right-handed alpha
Helix 75	75	O	82	111	Right-handed alpha
Helix 76	76	O	113	145	Right-handed alpha
Helix 77	77	O	146	163	Right-handed alpha
Helix 78	78	P	3	34	Right-handed alpha
Helix 79	79	P	36	64	Right-handed alpha
Helix 80	80	P	82	111	Right-handed alpha
Helix 81	81	P	113	145	Right-handed alpha
Helix 82	82	P	146	162	Right-handed alpha
Helix 83	83	Q	3	34	Right-handed alpha
Helix 84	84	Q	36	64	Right-handed alpha
Helix 85	85	Q	82	111	Right-handed alpha
Helix 86	86	Q	113	145	Right-handed alpha
Helix 87	87	Q	146	163	Right-handed alpha
Helix 88	88	R	3	34	Right-handed alpha
Helix 89	89	R	36	64	Right-handed alpha
Helix 90	90	R	82	111	Right-handed alpha
Helix 91	91	R	113	145	Right-handed alpha
Helix 92	92	R	146	163	Right-handed alpha
Helix 93	93	S	3	34	Right-handed alpha
Helix 94	94	S	36	64	Right-handed alpha
Helix 95	95	S	82	111	Right-handed alpha
Helix 96	96	S	113	145	Right-handed alpha
Helix 97	97	S	146	162	Right-handed alpha
Helix 98	98	T	3	34	Right-handed alpha
Helix 99	99	T	36	64	Right-handed alpha
Helix 100	100	T	82	111	Right-handed alpha
Helix 101	101	T	113	145	Right-handed alpha
Helix 102	102	T	146	163	Right-handed alpha
Helix 103	103	U	3	34	Right-handed alpha
Helix 104	104	U	36	64	Right-handed alpha
Helix 105	105	U	82	111	Right-handed alpha
Helix 106	106	U	113	145	Right-handed alpha
Helix 107	107	U	146	163	Right-handed alpha
Helix 108	108	V	3	34	Right-handed alpha
Helix 109	109	V	36	64	Right-handed alpha
Helix 110	110	V	82	111	Right-handed alpha
Helix 111	111	V	113	120	Right-handed alpha
Helix 112	112	V	120	145	Right-handed alpha
Helix 113	113	V	146	163	Right-handed alpha
Helix 114	114	W	3	34	Right-handed alpha
Helix 115	115	W	36	64	Right-handed alpha
Helix 116	116	W	82	111	Right-handed alpha
Helix 117	117	W	113	145	Right-handed alpha
Helix 118	118	W	146	163	Right-handed alpha
Helix 119	119	X	3	34	Right-handed alpha
Helix 120	120	X	36	64	Right-handed alpha
Helix 121	121	X	82	111	Right-handed alpha
Helix 122	122	X	113	145	Right-handed alpha
Helix 123	123	X	146	163	Right-handed alpha

There are 12 sheets in PDB entry 4CMY. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, GA, HA, IA, JA, KA, NA, SA, VA,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	74	first strand
Strand 2	M	72	74	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	74	first strand
Strand 2	R	72	74	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	74	first strand
Strand 2	E	72	74	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	74	first strand
Strand 2	F	72	74	anti-parallel

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There are 2 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	72	74	first strand
Strand 2	T	72	74	anti-parallel

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There are 2 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	72	74	first strand
Strand 2	P	72	74	anti-parallel

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There are 2 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	72	74	first strand
Strand 2	Q	72	74	anti-parallel

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There are 2 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	72	74	first strand
Strand 2	X	72	74	anti-parallel

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There are 2 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	72	74	first strand
Strand 2	L	72	74	anti-parallel

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There are 2 strands in NA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	72	74	first strand
Strand 2	O	72	74	anti-parallel

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There are 2 strands in SA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	72	74	first strand
Strand 2	U	72	74	anti-parallel

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There are 2 strands in VA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	72	74	first strand
Strand 2	W	72	74	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4CMY

Analysis of interatomic Contacts of Structural Units in PDB entry:
4CMY