Analysis of interatomic Contacts of Structural Units in PDB entry:
4CND


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4CND entry

There are 2 chains in PDB entry 4CND (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP -5GLN 164
B
 ASP -5GLN 164
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4CND. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-3 3Right-handed alpha
Helix 2
2
A
14 28Right-handed alpha
Helix 3
3
A
43 51Right-handed alpha
Helix 4
4
A
53 59Right-handed alpha
Helix 5
5
A
65 71Right-handed alpha
Helix 6
6
A
92 105Right-handed alpha
Helix 7
7
A
121 126Right-handed alpha
Helix 8
8
A
144 163Right-handed alpha
Helix 9
9
B
-3 3Right-handed alpha
Helix 10
10
B
14 28Right-handed alpha
Helix 11
11
B
53 59Right-handed alpha
Helix 12
12
B
65 71Right-handed alpha
Helix 13
13
B
92 105Right-handed alpha
Helix 14
14
B
121 126Right-handed alpha
Helix 15
15
B
144 163Right-handed alpha
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There are 2 sheets in PDB entry 4CND. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
32 36parallel
Strand 3
A
5 10parallel
Strand 4
A
109 113parallel
Strand 5
A
75 79parallel
Strand 6
A
130 132parallel
Strand 7
A
90 91parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
32 36parallel
Strand 3
B
5 10parallel
Strand 4
B
109 113parallel
Strand 5
B
75 79parallel
Strand 6
B
130 132parallel
Strand 7
B
90 91parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il