Analysis of interatomic Contacts of Structural Units in PDB entry:
4COJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4COJ entry

There are 2 chains in PDB entry 4COJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 633
B
 MET 1GLU 637
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 4COJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 23Right-handed alpha
Helix 2
2
A
23 30Right-handed alpha
Helix 3
3
A
33 36Right-handed 310
Helix 4
4
A
37 46Right-handed alpha
Helix 5
5
A
66 74Right-handed alpha
Helix 6
6
A
74 95Right-handed alpha
Helix 7
7
A
95 108Right-handed alpha
Helix 8
8
A
130 137Right-handed alpha
Helix 9
9
A
151 168Right-handed alpha
Helix 10
10
A
178 193Right-handed alpha
Helix 11
11
A
197 199Right-handed 310
Helix 12
12
A
200 217Right-handed alpha
Helix 13
13
A
234 242Right-handed alpha
Helix 14
14
A
253 255Right-handed 310
Helix 15
15
A
256 275Right-handed alpha
Helix 16
16
A
298 313Right-handed alpha
Helix 17
17
A
323 327Right-handed 310
Helix 18
18
A
376 384Right-handed alpha
Helix 19
19
A
386 418Right-handed alpha
Helix 20
20
A
421 426Right-handed alpha
Helix 21
21
A
430 432Right-handed 310
Helix 22
22
A
442 450Right-handed alpha
Helix 23
23
A
463 489Right-handed alpha
Helix 24
24
A
501 515Right-handed alpha
Helix 25
25
A
516 518Right-handed 310
Helix 26
26
A
535 547Right-handed alpha
Helix 27
27
A
548 551Right-handed 310
Helix 28
28
A
566 581Right-handed alpha
Helix 29
29
A
626 633Right-handed alpha
Helix 30
30
B
8 23Right-handed alpha
Helix 31
31
B
23 31Right-handed alpha
Helix 32
32
B
33 36Right-handed 310
Helix 33
33
B
37 47Right-handed alpha
Helix 34
34
B
65 73Right-handed alpha
Helix 35
35
B
74 95Right-handed alpha
Helix 36
36
B
95 108Right-handed alpha
Helix 37
37
B
130 137Right-handed alpha
Helix 38
38
B
151 168Right-handed alpha
Helix 39
39
B
178 193Right-handed alpha
Helix 40
40
B
197 199Right-handed 310
Helix 41
41
B
200 216Right-handed alpha
Helix 42
42
B
234 242Right-handed alpha
Helix 43
43
B
253 255Right-handed 310
Helix 44
44
B
256 275Right-handed alpha
Helix 45
45
B
298 313Right-handed alpha
Helix 46
46
B
323 327Right-handed 310
Helix 47
47
B
376 384Right-handed alpha
Helix 48
48
B
386 418Right-handed alpha
Helix 49
49
B
421 426Right-handed alpha
Helix 50
50
B
442 451Right-handed alpha
Helix 51
51
B
463 489Right-handed alpha
Helix 52
52
B
501 515Right-handed alpha
Helix 53
53
B
516 518Right-handed 310
Helix 54
54
B
535 547Right-handed alpha
Helix 55
55
B
566 580Right-handed alpha
Helix 56
56
B
626 635Right-handed alpha
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There are 16 sheets in PDB entry 4COJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, BA, BB, BC, BD, BE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
B
2 4anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 113first strand
Strand 2
A
367 375parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 296first strand
Strand 2
A
284 292anti-parallel
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There are 8 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
492 496first strand
Strand 2
A
434 441parallel
Strand 3
A
367 375parallel
Strand 4
A
125 127anti-parallel
Strand 5
A
174 176parallel
Strand 6
A
228 233parallel
Strand 7
A
284 292parallel
Strand 8
A
295 296anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
492 496first strand
Strand 2
A
434 441parallel
Strand 3
A
367 375parallel
Strand 4
A
111 113parallel
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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
556 559first strand
Strand 2
A
584 588parallel
Strand 3
A
315 320anti-parallel
Strand 4
A
284 292parallel
Strand 5
A
295 296anti-parallel
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There are 10 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
492 496first strand
Strand 2
A
434 441parallel
Strand 3
A
367 375parallel
Strand 4
A
125 127anti-parallel
Strand 5
A
174 176parallel
Strand 6
A
228 233parallel
Strand 7
A
284 292parallel
Strand 8
A
315 320parallel
Strand 9
A
584 588anti-parallel
Strand 10
A
556 559parallel
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There are 10 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
556 559first strand
Strand 2
A
584 588parallel
Strand 3
A
315 320anti-parallel
Strand 4
A
284 292parallel
Strand 5
A
228 233parallel
Strand 6
A
174 176parallel
Strand 7
A
125 127parallel
Strand 8
A
367 375anti-parallel
Strand 9
A
434 441parallel
Strand 10
A
492 496parallel
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There are 9 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
556 559first strand
Strand 2
A
584 588parallel
Strand 3
A
315 320anti-parallel
Strand 4
A
284 292parallel
Strand 5
A
228 233parallel
Strand 6
A
174 176parallel
Strand 7
A
125 127parallel
Strand 8
A
367 375anti-parallel
Strand 9
A
111 113parallel
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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 456first strand
Strand 2
A
459 462anti-parallel
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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
599 600first strand
Strand 2
A
591 593anti-parallel
Strand 3
A
614 618anti-parallel
Strand 4
A
623 625anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 113first strand
Strand 2
B
367 375parallel
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There are 10 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
492 496first strand
Strand 2
B
434 441parallel
Strand 3
B
367 375parallel
Strand 4
B
125 127anti-parallel
Strand 5
B
174 176parallel
Strand 6
B
228 233parallel
Strand 7
B
284 290parallel
Strand 8
B
315 320parallel
Strand 9
B
584 588anti-parallel
Strand 10
B
556 559parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
492 496first strand
Strand 2
B
434 441parallel
Strand 3
B
367 375parallel
Strand 4
B
111 113parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
453 456first strand
Strand 2
B
459 462anti-parallel
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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
599 600first strand
Strand 2
B
591 593anti-parallel
Strand 3
B
614 618anti-parallel
Strand 4
B
623 625anti-parallel
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