Analysis of interatomic Contacts of Structural Units in PDB entry:
4CQK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4CQK entry

There are 14 chains in PDB entry 4CQK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 1CYS 47
B
 ARG 1CYS 47
C
 ARG 1CYS 47
D
 ARG 1CYS 47
E
 ARG 1CYS 47
F
 ARG 1CYS 47
G
 ARG 1CYS 47
H
 ARG 1CYS 47
I
 ARG 1CYS 47
J
 ARG 1CYS 47
K
 ARG 1CYS 47
L
 ARG 1CYS 47
M
 ARG 1CYS 47
N
 ARG 1CYS 47
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4CQK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 27Right-handed alpha
Helix 2
2
B
16 27Right-handed alpha
Helix 3
3
C
16 27Right-handed alpha
Helix 4
4
D
16 27Right-handed alpha
Helix 5
5
E
16 27Right-handed alpha
Helix 6
6
F
16 27Right-handed alpha
Helix 7
7
G
16 27Right-handed alpha
Helix 8
8
H
16 27Right-handed alpha
Helix 9
9
I
16 27Right-handed alpha
Helix 10
10
J
16 27Right-handed alpha
Helix 11
11
K
16 27Right-handed alpha
Helix 12
12
L
16 27Right-handed alpha
Helix 13
13
M
16 27Right-handed alpha
Helix 14
14
N
16 27Right-handed alpha
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There are 14 sheets in PDB entry 4CQK. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA, FA, GA, HA, IA, JA, KA, LA, MA, NA,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
41 45anti-parallel
Strand 3
A
31 34anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 6first strand
Strand 2
B
41 45anti-parallel
Strand 3
B
31 34anti-parallel
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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 6first strand
Strand 2
C
41 45anti-parallel
Strand 3
C
31 34anti-parallel
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There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 6first strand
Strand 2
D
41 45anti-parallel
Strand 3
D
31 34anti-parallel
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There are 3 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2 6first strand
Strand 2
E
41 46anti-parallel
Strand 3
E
31 34anti-parallel
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There are 3 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
3 6first strand
Strand 2
F
41 45anti-parallel
Strand 3
F
31 34anti-parallel
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There are 3 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
3 6first strand
Strand 2
G
41 45anti-parallel
Strand 3
G
31 34anti-parallel
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There are 3 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
41 45anti-parallel
Strand 3
H
31 34anti-parallel
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There are 3 strands in IA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
3 6first strand
Strand 2
I
41 45anti-parallel
Strand 3
I
31 34anti-parallel
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There are 3 strands in JA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
3 6first strand
Strand 2
J
41 45anti-parallel
Strand 3
J
31 34anti-parallel
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There are 3 strands in KA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
3 6first strand
Strand 2
K
41 45anti-parallel
Strand 3
K
31 34anti-parallel
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There are 3 strands in LA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
3 6first strand
Strand 2
L
41 45anti-parallel
Strand 3
L
31 34anti-parallel
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There are 3 strands in MA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
2 6first strand
Strand 2
M
41 46anti-parallel
Strand 3
M
31 34anti-parallel
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There are 3 strands in NA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
3 6first strand
Strand 2
N
41 45anti-parallel
Strand 3
N
31 34anti-parallel
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