Analysis of interatomic Contacts of Structural Units in PDB entry:
4CVB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4CVB entry

There is 1 chain in PDB entry 4CVB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 45GLU 606
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4CVB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
54 59Right-handed alpha
Helix 2
2
A
88 92Right-handed 310
Helix 3
3
A
145 149Right-handed 310
Helix 4
4
A
151 156Right-handed 310
Helix 5
5
A
195 199Right-handed 310
Helix 6
6
A
252 256Right-handed 310
Helix 7
7
A
260 264Right-handed 310
Helix 8
8
A
293 298Right-handed alpha
Helix 9
9
A
417 420Right-handed 310
Helix 10
10
A
471 475Right-handed 310
Helix 11
11
A
578 584Right-handed alpha
Helix 12
12
A
585 587Right-handed 310
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There are 10 sheets in PDB entry 4CVB. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 79first strand
Strand 2
A
518 521parallel
Strand 3
A
525 529anti-parallel
Strand 4
A
534 539anti-parallel
Strand 5
A
545 550anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 99first strand
Strand 2
A
598 603anti-parallel
Strand 3
A
567 574anti-parallel
Strand 4
A
559 564anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
115 119anti-parallel
Strand 3
A
124 129anti-parallel
Strand 4
A
135 140anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 163first strand
Strand 2
A
166 170anti-parallel
Strand 3
A
175 180anti-parallel
Strand 4
A
186 191anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 209first strand
Strand 2
A
212 215anti-parallel
Strand 3
A
227 232anti-parallel
Strand 4
A
238 243anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 276first strand
Strand 2
A
281 285anti-parallel
Strand 3
A
309 313anti-parallel
Strand 4
A
320 325anti-parallel
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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 346first strand
Strand 2
A
368 374anti-parallel
Strand 3
A
382 386anti-parallel
Strand 4
A
392 396anti-parallel
Strand 5
A
356 359anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 407first strand
Strand 2
A
413 415anti-parallel
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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 430first strand
Strand 2
A
459 465anti-parallel
Strand 3
A
478 484anti-parallel
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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 446first strand
Strand 2
A
451 457anti-parallel
Strand 3
A
492 498anti-parallel
Strand 4
A
504 510anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il