Analysis of interatomic Contacts of Structural Units in PDB entry:
4CVL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4CVL entry

There is 1 chain in PDB entry 4CVL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1CYS 451
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 4CVL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 15Right-handed alpha
Helix 2
2
A
50 53Right-handed 310
Helix 3
3
A
54 61Right-handed alpha
Helix 4
4
A
84 98Right-handed alpha
Helix 5
5
A
112 129Right-handed alpha
Helix 6
6
A
130 132Right-handed 310
Helix 7
7
A
145 153Right-handed alpha
Helix 8
8
A
171 181Right-handed alpha
Helix 9
9
A
200 209Right-handed alpha
Helix 10
10
A
210 215Right-handed 310
Helix 11
11
A
229 237Right-handed alpha
Helix 12
12
A
287 303Right-handed alpha
Helix 13
13
A
306 316Right-handed alpha
Helix 14
14
A
344 356Right-handed alpha
Helix 15
15
A
375 387Right-handed alpha
Helix 16
16
A
399 408Right-handed alpha
Helix 17
17
A
416 425Right-handed alpha
Helix 18
18
A
438 442Right-handed 310
Helix 19
19
A
443 449Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4CVL. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
24 25anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 19first strand
Strand 2
A
79 81anti-parallel
Strand 3
A
63 68parallel
Strand 4
A
39 42parallel
Strand 5
A
27 29parallel
Back to list of sheets
Back to top of page

There are 9 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
160 164parallel
Strand 3
A
104 108parallel
Strand 4
A
184 187parallel
Strand 5
A
220 224parallel
Strand 6
A
242 246parallel
Strand 7
A
254 261parallel
Strand 8
A
267 273anti-parallel
Strand 9
A
278 281anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 328first strand
Strand 2
A
334 337anti-parallel
Strand 3
A
432 436parallel
Strand 4
A
361 365parallel
Strand 5
A
392 396parallel
Strand 6
A
412 414parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il