Analysis of interatomic Contacts of Structural Units in PDB entry:
4CVQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4CVQ entry

There are 2 chains in PDB entry 4CVQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 404
B
 SER 2LEU 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 4CVQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 11Right-handed 310
Helix 2
2
A
19 31Right-handed alpha
Helix 3
3
A
43 47Right-handed 310
Helix 4
4
A
51 62Right-handed alpha
Helix 5
5
A
63 65Right-handed 310
Helix 6
6
A
74 87Right-handed alpha
Helix 7
7
A
94 96Right-handed 310
Helix 8
8
A
103 114Right-handed alpha
Helix 9
9
A
129 139Right-handed alpha
Helix 10
10
A
149 153Right-handed 310
Helix 11
11
A
157 164Right-handed alpha
Helix 12
12
A
186 200Right-handed alpha
Helix 13
13
A
222 227Right-handed alpha
Helix 14
14
A
244 248Right-handed 310
Helix 15
15
A
258 260Right-handed 310
Helix 16
16
A
261 275Right-handed alpha
Helix 17
17
A
280 283Right-handed 310
Helix 18
18
A
284 291Right-handed alpha
Helix 19
19
A
296 301Right-handed alpha
Helix 20
20
A
304 320Right-handed alpha
Helix 21
21
A
339 344Right-handed alpha
Helix 22
22
A
347 360Right-handed alpha
Helix 23
23
A
367 370Right-handed 310
Helix 24
24
A
384 401Right-handed alpha
Helix 25
25
B
7 11Right-handed 310
Helix 26
26
B
21 31Right-handed alpha
Helix 27
27
B
43 47Right-handed 310
Helix 28
28
B
51 62Right-handed alpha
Helix 29
29
B
63 65Right-handed 310
Helix 30
30
B
74 87Right-handed alpha
Helix 31
31
B
94 96Right-handed 310
Helix 32
32
B
103 114Right-handed alpha
Helix 33
33
B
129 139Right-handed alpha
Helix 34
34
B
149 153Right-handed 310
Helix 35
35
B
157 164Right-handed alpha
Helix 36
36
B
186 200Right-handed alpha
Helix 37
37
B
223 227Right-handed 310
Helix 38
38
B
244 247Right-handed 310
Helix 39
39
B
258 260Right-handed 310
Helix 40
40
B
261 275Right-handed alpha
Helix 41
41
B
280 284Right-handed 310
Helix 42
42
B
285 291Right-handed alpha
Helix 43
43
B
296 301Right-handed alpha
Helix 44
44
B
304 319Right-handed alpha
Helix 45
45
B
347 360Right-handed alpha
Helix 46
46
B
367 370Right-handed 310
Helix 47
47
B
384 401Right-handed alpha
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There are 8 sheets in PDB entry 4CVQ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 37first strand
Strand 2
A
361 362parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 101first strand
Strand 2
A
250 255anti-parallel
Strand 3
A
232 237anti-parallel
Strand 4
A
203 207parallel
Strand 5
A
169 175parallel
Strand 6
A
121 126parallel
Strand 7
A
142 147parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 324first strand
Strand 2
A
337 338anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 334first strand
Strand 2
A
377 380anti-parallel
Strand 3
A
364 365anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 37first strand
Strand 2
B
361 362parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 102first strand
Strand 2
B
249 255anti-parallel
Strand 3
B
232 237anti-parallel
Strand 4
B
203 207parallel
Strand 5
B
169 175parallel
Strand 6
B
121 126parallel
Strand 7
B
142 147parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
323 324first strand
Strand 2
B
337 338anti-parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 334first strand
Strand 2
B
377 380anti-parallel
Strand 3
B
364 365anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il