Analysis of interatomic Contacts of Structural Units in PDB entry:
4CYJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4CYJ entry

There are 2 chains in PDB entry 4CYJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 207ALA 630
B
 GLU 207GLU 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 70 helices in PDB entry 4CYJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
208 214Right-handed alpha
Helix 2
2
A
223 237Right-handed alpha
Helix 3
3
A
297 309Right-handed alpha
Helix 4
4
A
346 351Right-handed alpha
Helix 5
5
A
366 387Right-handed alpha
Helix 6
6
A
395 397Right-handed 310
Helix 7
7
A
412 419Right-handed alpha
Helix 8
8
A
426 448Right-handed alpha
Helix 9
9
A
450 454Right-handed 310
Helix 10
10
A
456 468Right-handed alpha
Helix 11
11
A
469 481Right-handed alpha
Helix 12
12
A
489 497Right-handed alpha
Helix 13
13
A
497 523Right-handed alpha
Helix 14
14
A
524 539Right-handed alpha
Helix 15
15
A
555 568Right-handed alpha
Helix 16
16
A
579 593Right-handed alpha
Helix 17
17
A
613 629Right-handed alpha
Helix 18
18
B
216 219Right-handed 310
Helix 19
19
B
221 237Right-handed alpha
Helix 20
20
B
297 310Right-handed alpha
Helix 21
21
B
346 351Right-handed alpha
Helix 22
22
B
366 387Right-handed alpha
Helix 23
23
B
395 397Right-handed 310
Helix 24
24
B
411 419Right-handed alpha
Helix 25
25
B
426 448Right-handed alpha
Helix 26
26
B
450 454Right-handed 310
Helix 27
27
B
456 468Right-handed alpha
Helix 28
28
B
469 481Right-handed alpha
Helix 29
29
B
489 497Right-handed alpha
Helix 30
30
B
497 539Right-handed alpha
Helix 31
31
B
549 552Right-handed 310
Helix 32
32
B
553 568Right-handed alpha
Helix 33
33
B
579 593Right-handed alpha
Helix 34
34
B
613 631Right-handed alpha
Helix 35
35
C
210 214Right-handed 310
Helix 36
36
C
223 237Right-handed alpha
Helix 37
37
C
298 309Right-handed alpha
Helix 38
38
C
346 351Right-handed alpha
Helix 39
39
C
366 387Right-handed alpha
Helix 40
40
C
395 397Right-handed 310
Helix 41
41
C
413 419Right-handed alpha
Helix 42
42
C
426 448Right-handed alpha
Helix 43
43
C
450 454Right-handed 310
Helix 44
44
C
456 468Right-handed alpha
Helix 45
45
C
469 481Right-handed alpha
Helix 46
46
C
489 497Right-handed alpha
Helix 47
47
C
497 523Right-handed alpha
Helix 48
48
C
524 539Right-handed alpha
Helix 49
49
C
554 568Right-handed alpha
Helix 50
50
C
579 593Right-handed alpha
Helix 51
51
C
613 632Right-handed alpha
Helix 52
52
D
216 219Right-handed 310
Helix 53
53
D
221 237Right-handed alpha
Helix 54
54
D
297 309Right-handed alpha
Helix 55
55
D
346 351Right-handed alpha
Helix 56
56
D
366 387Right-handed alpha
Helix 57
57
D
395 397Right-handed 310
Helix 58
58
D
411 419Right-handed alpha
Helix 59
59
D
426 448Right-handed alpha
Helix 60
60
D
450 454Right-handed 310
Helix 61
61
D
456 468Right-handed alpha
Helix 62
62
D
469 481Right-handed alpha
Helix 63
63
D
489 497Right-handed alpha
Helix 64
64
D
497 539Right-handed alpha
Helix 65
65
D
549 552Right-handed 310
Helix 66
66
D
553 568Right-handed alpha
Helix 67
67
D
579 593Right-handed alpha
Helix 68
68
D
613 631Right-handed alpha
Helix 69
69
E
376 383Right-handed alpha
Helix 70
70
F
376 382Right-handed alpha
Back to top of page

There are 14 sheets in PDB entry 4CYJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, BD, CA, CB, CC, A, DB, C, DD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 255first strand
Strand 2
A
271 278anti-parallel
Strand 3
A
284 291anti-parallel
Strand 4
A
332 338anti-parallel
Strand 5
A
319 325anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 345first strand
Strand 2
A
399 403anti-parallel
Strand 3
A
406 409anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
597 601first strand
Strand 2
A
608 612anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 214first strand
Strand 2
E
365 367anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
250 255first strand
Strand 2
B
271 278anti-parallel
Strand 3
B
284 291anti-parallel
Strand 4
B
332 338anti-parallel
Strand 5
B
319 325anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 345first strand
Strand 2
B
399 403anti-parallel
Strand 3
B
406 409anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
597 601first strand
Strand 2
B
607 612anti-parallel
Strand 3
E
389 393anti-parallel
Strand 4
E
384 386anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
250 255first strand
Strand 2
C
271 278anti-parallel
Strand 3
C
284 291anti-parallel
Strand 4
C
332 338anti-parallel
Strand 5
C
319 325anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
344 345first strand
Strand 2
C
399 403anti-parallel
Strand 3
C
406 409anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
597 601first strand
Strand 2
C
608 612anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
212 214first strand
Strand 2
F
365 367anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
250 255first strand
Strand 2
D
271 278anti-parallel
Strand 3
D
284 291anti-parallel
Strand 4
D
332 338anti-parallel
Strand 5
D
319 325anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
344 345first strand
Strand 2
D
399 403anti-parallel
Strand 3
D
406 409anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
597 601first strand
Strand 2
D
607 612anti-parallel
Strand 3
F
389 393anti-parallel
Strand 4
F
384 386anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il