Analysis of interatomic Contacts of Structural Units in PDB entry:
4D00


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D00 entry

There are 5 chains in PDB entry 4D00 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 0GLU 318
B
 GLY 1PRO 175
C
 ALA -2GLU 318
D
 GLY 1VAL 176
E
 PRO 0GLN 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 4D00. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 62Right-handed alpha
Helix 2
2
A
63 70Right-handed 310
Helix 3
3
A
94 103Right-handed alpha
Helix 4
4
A
180 189Right-handed alpha
Helix 5
5
B
4 10Right-handed alpha
Helix 6
6
B
37 55Right-handed alpha
Helix 7
7
B
74 127Right-handed alpha
Helix 8
8
B
145 154Right-handed alpha
Helix 9
9
B
158 171Right-handed alpha
Helix 10
10
C
55 62Right-handed alpha
Helix 11
11
C
63 70Right-handed 310
Helix 12
12
C
94 103Right-handed alpha
Helix 13
13
C
180 189Right-handed alpha
Helix 14
14
D
4 10Right-handed alpha
Helix 15
15
D
37 57Right-handed alpha
Helix 16
16
D
74 127Right-handed alpha
Helix 17
17
D
145 154Right-handed alpha
Helix 18
18
D
158 172Right-handed alpha
Helix 19
19
E
55 62Right-handed alpha
Helix 20
20
E
63 70Right-handed 310
Helix 21
21
E
94 103Right-handed alpha
Helix 22
22
E
180 189Right-handed alpha
Helix 23
23
F
4 10Right-handed alpha
Helix 24
24
F
37 57Right-handed alpha
Helix 25
25
F
74 127Right-handed alpha
Helix 26
26
F
145 154Right-handed alpha
Helix 27
27
F
158 172Right-handed alpha
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There are 33 sheets in PDB entry 4D00. Click on sheet of interest to get list of strands forming it: BA, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, A, CA, CB, CC, CD, CE, CF, CG, CH, CI, CJ, FA, EA, EB, EC, ED, EE, EF, EG, EH, EI, EJ,

There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 36first strand
Strand 2
B
22 28anti-parallel
Strand 3
A
1 7anti-parallel
Strand 4
B
137 140anti-parallel
Strand 5
B
130 132anti-parallel
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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 16first strand
Strand 2
A
24 26anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
308 310anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
287 288parallel
Strand 3
A
300 301parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
266 267parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
76 79parallel
Strand 3
A
258 261parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 73first strand
Strand 2
A
107 112anti-parallel
Strand 3
A
249 253anti-parallel
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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 125first strand
Strand 2
A
142 147anti-parallel
Strand 3
A
244 247anti-parallel
Strand 4
A
169 177anti-parallel
Strand 5
A
222 230anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 132first strand
Strand 2
A
135 137anti-parallel
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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 162first strand
Strand 2
A
235 240anti-parallel
Strand 3
A
195 198anti-parallel
Strand 4
A
203 206anti-parallel
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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 280first strand
Strand 2
A
274 276anti-parallel
Strand 3
A
294 296anti-parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
31 36first strand
Strand 2
D
22 28anti-parallel
Strand 3
C
1 7anti-parallel
Strand 4
D
137 140anti-parallel
Strand 5
D
130 132anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 16first strand
Strand 2
C
24 26anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 31first strand
Strand 2
C
308 310anti-parallel
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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 34first strand
Strand 2
C
287 288parallel
Strand 3
C
300 301parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
41 42first strand
Strand 2
C
266 267parallel
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There are 3 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 50first strand
Strand 2
C
76 79parallel
Strand 3
C
258 261parallel
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There are 3 strands in CF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 73first strand
Strand 2
C
107 112anti-parallel
Strand 3
C
249 253anti-parallel
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There are 5 strands in CG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
121 125first strand
Strand 2
C
142 147anti-parallel
Strand 3
C
244 247anti-parallel
Strand 4
C
169 177anti-parallel
Strand 5
C
222 230anti-parallel
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There are 2 strands in CH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
127 132first strand
Strand 2
C
135 137anti-parallel
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There are 4 strands in CI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
157 162first strand
Strand 2
C
235 240anti-parallel
Strand 3
C
195 198anti-parallel
Strand 4
C
203 206anti-parallel
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There are 3 strands in CJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
279 280first strand
Strand 2
C
274 276anti-parallel
Strand 3
C
294 296anti-parallel
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There are 5 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
31 36first strand
Strand 2
F
22 28anti-parallel
Strand 3
E
1 7anti-parallel
Strand 4
F
137 140anti-parallel
Strand 5
F
130 132anti-parallel
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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
14 16first strand
Strand 2
E
24 26anti-parallel
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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
29 31first strand
Strand 2
E
308 310anti-parallel
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There are 3 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
33 34first strand
Strand 2
E
287 288parallel
Strand 3
E
300 301parallel
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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
41 42first strand
Strand 2
E
266 267parallel
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There are 3 strands in EE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
48 50first strand
Strand 2
E
76 79parallel
Strand 3
E
258 261parallel
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There are 3 strands in EF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
72 73first strand
Strand 2
E
107 112anti-parallel
Strand 3
E
249 253anti-parallel
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There are 5 strands in EG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
121 125first strand
Strand 2
E
142 147anti-parallel
Strand 3
E
244 247anti-parallel
Strand 4
E
169 177anti-parallel
Strand 5
E
222 230anti-parallel
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There are 2 strands in EH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
127 132first strand
Strand 2
E
135 137anti-parallel
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There are 4 strands in EI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
157 162first strand
Strand 2
E
235 240anti-parallel
Strand 3
E
195 198anti-parallel
Strand 4
E
203 206anti-parallel
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There are 3 strands in EJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
279 280first strand
Strand 2
E
274 276anti-parallel
Strand 3
E
294 296anti-parallel
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