Analysis of interatomic Contacts of Structural Units in PDB entry:
4D01


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D01 entry

There is 1 chain in PDB entry 4D01 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2HIS 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 4D01. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 14Right-handed alpha
Helix 2
2
A
70 75Right-handed 310
Helix 3
3
A
85 87Right-handed 310
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There are 6 sheets in PDB entry 4D01. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 83first strand
Strand 2
A
109 113anti-parallel
Strand 3
A
115 133anti-parallel
Strand 4
A
141 150anti-parallel
Strand 5
A
198 210anti-parallel
Strand 6
A
185 191anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 83first strand
Strand 2
A
109 113anti-parallel
Strand 3
A
115 133anti-parallel
Strand 4
A
51 68anti-parallel
Strand 5
A
31 46anti-parallel
Strand 6
A
158 162parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 83first strand
Strand 2
A
109 113anti-parallel
Strand 3
A
115 133anti-parallel
Strand 4
A
141 150anti-parallel
Strand 5
A
92 94parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 182first strand
Strand 2
A
198 210anti-parallel
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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 83first strand
Strand 2
A
109 113anti-parallel
Strand 3
A
115 133anti-parallel
Strand 4
A
141 150anti-parallel
Strand 5
A
198 210anti-parallel
Strand 6
A
178 182anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 191first strand
Strand 2
A
198 210anti-parallel
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