Analysis of interatomic Contacts of Structural Units in PDB entry:
4D02


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D02 entry

There is 1 chain in PDB entry 4D02 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2PRO 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4D02. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 54Right-handed 310
Helix 2
2
A
55 67Right-handed alpha
Helix 3
3
A
68 72Right-handed 310
Helix 4
4
A
87 95Right-handed alpha
Helix 5
5
A
103 115Right-handed alpha
Helix 6
6
A
179 182Right-handed 310
Helix 7
7
A
183 199Right-handed alpha
Helix 8
8
A
202 215Right-handed alpha
Helix 9
9
A
235 247Right-handed alpha
Helix 10
10
A
263 280Right-handed alpha
Helix 11
11
A
291 293Right-handed 310
Helix 12
12
A
294 304Right-handed alpha
Helix 13
13
A
320 334Right-handed alpha
Helix 14
14
A
351 363Right-handed alpha
Helix 15
15
A
378 397Right-handed alpha
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There are 7 sheets in PDB entry 4D02. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
9 11anti-parallel
Strand 3
A
38 41anti-parallel
Strand 4
A
45 48anti-parallel
Strand 5
A
74 76parallel
Strand 6
A
100 102parallel
Strand 7
A
121 123parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 16first strand
Strand 2
A
33 35anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
27 28anti-parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 133first strand
Strand 2
A
136 142anti-parallel
Strand 3
A
152 156anti-parallel
Strand 4
A
161 165anti-parallel
Strand 5
A
222 225parallel
Strand 6
A
230 231anti-parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 289first strand
Strand 2
A
251 258parallel
Strand 3
A
305 311parallel
Strand 4
A
339 346parallel
Strand 5
A
371 374anti-parallel
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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 289first strand
Strand 2
A
251 258parallel
Strand 3
A
305 311parallel
Strand 4
A
339 346parallel
Strand 5
A
366 367parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 374first strand
Strand 2
A
339 346anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il